
|
Binary Alignment Map Format
|
BAM
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Biological Pathway eXchange
|
BioPAX
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Browser Extensible Data Format
|
BED
|
Standard
|
|
None
|
|
|
|
None
|
|
|

|
CellML
|
CellML
|
Standard
|
|
|
|
|
|
|
|
|
|
Chemical Entities of Biological Interest
|
ChEBI
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Core Information for Metabolomics Reporting
|
CIMR
|
Standard
|
|
|
|
|
|
|
|
|
|
Enzyme Mechanism Ontology
|
EMO
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Evidence and Conclusion Ontology
|
ECO
|
Standard
|
|
|
|
|
|
None
|
|
|

|
FASTA Sequence Format
|
FASTA
|
Standard
|
|
|
|
|
|
None
|
|
|

|
FASTQ Sequence and Sequence Quality Format
|
FASTQ Sequence and Sequence Quality Format
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Gel electrophoresis Markup Language
|
PSI GelML
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Gene Feature File version 1
|
GFF
|
Standard
|
|
|
|
|
None
|
None
|
|
|
|
Gene Ontology
|
GO
|
Standard
|
|
|
|
|
|
|
|
|
|
HUPO PSI Mass Spectrometry Controlled Vocabulary
|
PSI-MS CV
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Investigation Study Assay Tabular
|
ISA-Tab
|
Standard
|
|
|
|
|
|
|
|
|
|
Just Enough Results Model Ontology
|
JERM
|
Standard
|
|
|
|
|
|
None
|
|
|

|
KEGG Mark-up Language
|
KGML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Kinetic Simulation Algorithm Ontology
|
KiSAO
|
Standard
|
|
|
|
|
|
None
|
|
|

|
macromolecular Crystallographic Information File
|
PDBx/mmCIF
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Mathematics Markup Language
|
MathML
|
Standard
|
|
None
|
|
None
|
|
None
|
|
|
|
Medical Subject Headings
|
MESH
|
Standard
|
|
|
|
|
|
None
|
|
|

|
MicroArray Gene Expression Markup Language
|
MAGE-ML
|
Standard
|
|
|
|
|
|
None
|
|
|

|
MicroArray Gene Expression Tabular Format
|
MAGE-TAB
|
Standard
|
None
|
|
|
|
|
None
|
|
|
|
Minimal Information About a Cellular Assay
|
MIACA
|
Standard
|
|
|
|
None
|
|
None
|
|
|
|
Minimal Information about a high throughput SEQuencing Experiment
|
MINSEQE
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimal Information Required In the Annotation of Models
|
MIRIAM
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimum Information about a Cardiac Electrophysiology Experiment
|
MICEE
|
Standard
|
|
|
|
|
None
|
None
|
|
|
|
Minimum Information About a Genotyping Experiment
|
MIGen
|
Standard
|
|
|
|
None
|
None
|
None
|
|
|
|
Minimum Information About a Microarray Experiment
|
MIAME
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimum Information about a Molecular Interaction Experiment
|
MIMIx
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimum Information About a Proteomics Experiment
|
MIAPE
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimum Information About a RNAi Experiment
|
MIARE
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Minimum Information About a Simulation Experiment
|
MIASE
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Minimum Information about Flow Cytometry
|
MIFlowCyt
|
Standard
|
|
|
|
|
|
|
|
|
|
Minimum Information for Publication of Quantitative Real-Time PCR Experiments
|
MIQE
|
Standard
|
|
|
|
None
|
|
|
|
|

|
mz Markup Language
|
mzML
|
Standard
|
|
|
|
|
|
|
|
|

|
NeuroML
|
NeuroML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Ontology of Physics for Biology
|
OPB
|
Standard
|
|
|
|
None
|
|
None
|
|
|

|
Open Microscopy Environment eXtensible Markup Language
|
OME-XML
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Pharmacometrics Markup Language
|
PharmML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Protein MODification
|
PSI-MOD
|
Standard
|
|
|
|
|
|
None
|
|
|
|
RNA Ontology
|
RNAO
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Sequence Alignment Map
|
SAM
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Sequence Ontology
|
SO
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Simulation Experiment Description Markup Language
|
SED-ML
|
Standard
|
|
|
|
|
|
None
|
|
|
|
SoftWare Ontology
|
SWO
|
Standard
|
|
|
|
|
|
None
|
|
|
|
Standards for Reporting Enzymology Data Guidelines
|
STRENDA
|
Standard
|
|
|
|
|
|
|
|
|

|
Systems Biology Graphical Notation
|
SBGN
|
Standard
|
|
|
|
|
|
None
|
|
|

|
Systems Biology Markup Language
|
SBML
|
Standard
|
|
|
|
|
|
|
|
|
|
Systems Biology Ontology
|
SBO
|
Standard
|
|
|
|
|
|
None
|
|
|