Image for FAIRDOM Community Standards  FAIRDOM Community Standards
FAIRDOM is a joint action of ERA-Net ERASysAPP and European Research Infrastructure ISBE to establish a data and model management service facility for Systems Biology. The prime mission is to support researchers, students, trainers, funders and publishers by enabling Systems Biology projects to make their Data, Operating procedures and Models, Findable, Accessible, Interoperable and Reusable (FAIR). This collections encompasses community standards used in FAIRDOM.

This record is maintained by: FAIRDOM 

Record added: Nov. 28, 2016, 2:48 p.m..
Record updated: Nov. 28, 2016, 3:25 p.m. by The FAIRsharing Team.

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28 records in view

Registry Name Abbreviation Type Subject Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Biological Pathway eXchange BioPAX Standard None ready

CellML CellML Standard ready
Chemical Entities of Biological Interest CHEBI Standard None ready

Core Information for Metabolomics Reporting CIMR Standard None ready

FASTA Sequence Format FASTA Standard None ready

Gel electrophoresis Markup Language PSI GelML Standard None ready
Gene Ontology GO Standard ready
HUPO PSI Mass Spectrometry Controlled Vocabulary PSI-MS CV Standard None ready

Investigation Study Assay Tabular ISA-Tab Standard ready
Kinetic Simulation Algorithm Ontology KiSAO Standard None ready

Minimal Information Required In the Annotation of Models MIRIAM Standard ready

Minimum Information about a Molecular Interaction Experiment MIMIx Standard ready

Minimum Information About a Proteomics Experiment MIAPE Standard ready

Minimum Information About a Simulation Experiment MIASE Standard None ready

mz Markup Language mzML Standard ready

Neural Open Markup Language NeuroML Standard None ready

Open Microscopy Environment eXtensible Markup Language OME-XML Standard None ready

Pharmacometrics Markup Language PharmML Standard None ready
Protein MODification PSI-MOD Standard None ready
RNA Ontology RNAO Standard None None ready
Sequence Ontology SO Standard None ready

Simulation Experiment Description Markup Language SED-ML Standard None ready
SoftWare Ontology SWO Standard None ready

Standards for Reporting Enzymology Data Guidelines STRENDA Standard ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Markup Language SBML Standard ready
Systems Biology Ontology SBO Standard None ready
The Neuroscience Lexicon NeuroLex Standard None ready