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Image for FAIRDOM Community Standards  FAIRDOM Community Standards
FAIRDOM is a joint action of ERA-Net ERASysAPP and European Research Infrastructure ISBE to establish a data and model management service facility for Systems Biology. The prime mission is to support researchers, students, trainers, funders and publishers by enabling Systems Biology projects to make their Data, Operating procedures and Models, Findable, Accessible, Interoperable and Reusable (FAIR). This collections encompasses community standards used in FAIRDOM.

This record is maintained by: FAIRDOM 

Record added: Nov. 28, 2016, 2:48 p.m..
Record updated: Nov. 28, 2016, 3:25 p.m. by The FAIRsharing Team.

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25 records in view

Registry Name Abbreviation Type Subject Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Biological Pathway eXchange BioPAX Standard None ready
Chemical Entities of Biological Interest CHEBI Standard None ready

Core Information for Metabolomics Reporting CIMR Standard None ready
Enzyme Mechanism Ontology EMO Standard None
None None ready

FASTQ Sequence and Sequence Quality Format FASTQ Sequence and Sequence Quality Format Standard None ready
Gene Ontology GO Standard ready
HUPO PSI Mass Spectrometry Controlled Vocabulary PSI-MS CV Standard None ready

Investigation Study Assay Tabular ISA-Tab Standard ready
Just Enough Results Model Ontology JERM Standard None None ready

MicroArray Gene Expression Tabular Format MAGE-TAB Standard None
None ready

Minimal Information About a Cellular Assay MIACA Standard None None ready

Minimum Information about a Cardiac Electrophysiology Experiment MICEE Standard None None ready

Minimum Information About a Microarray Experiment MIAME Standard ready

Minimum Information about a Molecular Interaction Experiment MIMIx Standard ready

Minimum Information About a Proteomics Experiment MIAPE Standard ready

Minimum Information About a RNAi Experiment MIARE Standard None ready

Minimum Information About a Simulation Experiment MIASE Standard None ready

Minimum Information for Publication of Quantitative Real-Time PCR Experiments MIQE Standard None ready

mz Markup Language mzML Standard ready

Neural Open Markup Language NeuroML Standard None ready

Open Microscopy Environment eXtensible Markup Language OME-XML Standard None ready
Protein MODification PSI-MOD Standard None ready

Sequence Alignment Map SAM Standard None None ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Results Markup Language SBRML Standard None None ready