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Image for FAIRDOM Community Standards  FAIRDOM Community Standards
FAIRDOM is a joint action of ERA-Net ERASysAPP and European Research Infrastructure ISBE to establish a data and model management service facility for Systems Biology. The prime mission is to support researchers, students, trainers, funders and publishers by enabling Systems Biology projects to make their Data, Operating procedures and Models, Findable, Accessible, Interoperable and Reusable (FAIR). This collections encompasses community standards used in FAIRDOM.

This record is maintained by: FAIRDOM 

Record added: Nov. 28, 2016, 2:48 p.m..
Record updated: Nov. 28, 2016, 3:25 p.m. by The FAIRsharing Team.

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19 records in view

Registry Name Abbreviation Type Subject Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Binary Alignment Map Format BAM Standard None ready
Chemical Entities of Biological Interest CHEBI Standard None ready
Enzyme Mechanism Ontology EMO Standard None
None None ready

FASTA Sequence Format FASTA Standard None ready

FASTQ Sequence and Sequence Quality Format FASTQ Sequence and Sequence Quality Format Standard None ready

Gene Feature File version 1 GFF Standard None None deprecated

KEGG Mark-up Language KGML Standard None ready

MicroArray Gene Expression Markup Language MAGE-ML Standard None deprecated

Minimal Information about a high throughput SEQuencing Experiment MINSEQE Standard ready

Minimum Information About a Genotyping Experiment MIGen Standard None None None ready

Minimum Information About a Microarray Experiment MIAME Standard ready

Minimum Information about a Molecular Interaction Experiment MIMIx Standard ready

Minimum Information for Publication of Quantitative Real-Time PCR Experiments MIQE Standard None ready

PDBx/mmCIF PDBx/mmCIF Standard None ready
RNA Ontology RNAO Standard None None ready
Sequence Ontology SO Standard None ready

Standards for Reporting Enzymology Data Guidelines STRENDA Standard ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Markup Language SBML Standard ready