Image for HUPO Proteomics Standards Initiative  HUPO Proteomics Standards Initiative
The HUPO Proteomics Standards Initiative (HUPO PSI) defines community standards for data representation in proteomics and interactomics to facilitate data comparison, exchange and verification. It was founded at the HUPO meeting in Washington, April 28-29, 2002.

This record is maintained by: HUPOPSI 

Record added: Feb. 28, 2017, 11:41 a.m..
Record updated: Sept. 2, 2017, 3:12 p.m. by HUPOPSI.

Homepage Reference

Taxonomic range


Proteomics. Public-private group maps out initiatives.

Kaiser J
Science 2002

View Paper (PubMed) View Paper (DOI)

The Proteomics Standards Initiative

Sandra Orchard, Henning Hermjakob, Rolf Apweiler
Proteomics 2003

View Paper (PubMed) View Paper (DOI)

29 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Gel electrophoresis Markup Language PSI GelML Standard None ready
HUPO PSI Mass Spectrometry Controlled Vocabulary PSI-MS CV Standard None ready

MIAPE: Capillary Electrophoresis MIAPE-CE Standard None ready

MIAPE: Column Chromatography MIAPE-CC Standard None ready

MIAPE: Gel Electrophoresis MIAPE-GE Standard ready

MIAPE: Gel Informatics MIAPE-GI Standard None ready

MIAPE: Mass Spectrometry MIAPE-MS Standard ready

MIAPE: Mass Spectrometry Informatics MIAPE-MSI Standard ready

MIAPE: Mass Spectrometry Quantification MIAPE-Quant Standard None ready

Minimum Information About a Bioactive Entity MIABE Standard None ready

Minimum Information about a Molecular Interaction Experiment MIMIx Standard ready

Minimum Information about a Protein Affinity Reagent MIAPAR Standard None None ready

Minimum Information About a Proteomics Experiment MIAPE Standard ready

Minimum Information About Sample Preparation for a Phosphoproteomics Experiment MIASPPE Standard None None uncertain

Molecular Interaction eXtensible Markup Language PSI-MI XML Standard None ready

Molecular Interaction Tabular MITAB Standard None ready

mzData mzData Standard None None deprecated

mz Markup Language mzML Standard ready

mz peptide and protein Identification Markup Language mzIdentML Standard None None ready

mz Quantitative Markup Language mzQuantML Standard None ready

mzTab mzTab Standard None ready

proBed proBed Standard None in development
Protein Affinity Reagent Controlled Vocabulary PSI-PAR CV Standard None None uncertain
Protein MODification PSI-MOD Standard None None ready
PSI Molecular Interaction Controlled Vocabulary PSI-MI CV Standard ready

Quality Control Markup Language QCML Standard None None in development
Sample processing and separations controlled vocabulary sepCV Standard None None ready

Separation Markup Language PSI SpML Standard None None ready

Transition Markup Language HUPO-PSI TraML Standard None ready