Metabolomics Standards and Databases

The Metabolomics Standards and Databases collection in FAIRsharing lists the standards and databases relevant to the metabolomics field, as identified in the article "Data standards can boost metabolomics research, and if there is a will, there is a way", Metabolomics, January 2016, 12:14.

This record is maintained by: agbeltran ORCID

Record updated: July 7, 2017, 1:44 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000006' by 'The FAIRsharing Team' at 15:20, 01 Aug 2016 (approved):

	'home_url' has been modified:
		Before: http://dx.doi.org/10.1007/s11306-015-0879-3
		After: http://dx.doi.org/10.1007/s11306-015-0879-3 Taxonomy list has changed:  Previous values: New values:  All|http://identifiers.org/taxonomy/1?resource=MIR:00100019

Edits to 'https://fairsharing.org/bsg-c000006' by 'The FAIRsharing Team' at 13:44, 07 Jul 2017 (approved):

	'description' has been modified:
		Before: The Metabolomics Standards and Databases collection in FAIRsharing lists the standards and databases relevant to the metabolomics field, as identified in the article "Data standards can boost metabolomics research, and if there is a will, there is a way", Metabolomics, January 2016, 12:14.
		After: The Metabolomics Standards and Databases collection in FAIRsharing lists the standards and databases relevant to the metabolomics field, as identified in the article "Data standards can boost metabolomics research, and if there is a will, there is a way", Metabolomics, January 2016, 12:14.

15 records in view

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Core Information for Metabolomics Reporting	CIMR	Standard	Centrally registered identifier Chemical entity Life Science Metabolite Metabolomics	All	Plantmetabolomics.org MTBLS	nmrCV NMR-ML ISA-Tab	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations Chemistry
eXtensible Experiment Markup Language	XEML	Standard	Experiment metadata Life Science Metabolomics	All	GMD	XML	None	Metabolomics Standards and Databases
imaging mz Markup Language	imzML	Standard	Image Imaging Life Science Mass spectrometry assay Tissue	All	None	PSI SpML XML MIAPE-MSI MIAPE mzML	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
Investigation Study Assay Tabular	ISA-Tab	Standard	Assay Biological sample DNA microarray Device Experiment metadata Plus 5 more...	All	SCDE MTBLS GMD GigaDB SCC Plus 7 more...	OBI CIMR MINSEQE MIQE MIAPE Plus 5 more...	EMBO Recommended Databases and Data Standards GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project Wheat Data Interoperability Guidelines bioCADDIE eTRIKS Standards Starter Pack Plus 1 more...
IUPAC International Chemical Identifier	InChI	Standard	Centrally registered identifier Chemical descriptor Chemical entity Chemical structure Cheminformatics Plus 4 more...	Not applicable	CCD ChemSpider ExplorEnz SwissLipids MNXref Plus 1 more...	AnIML	Cell Press - Trends In Biochemical Sciences - Instructions for Authors	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project Chemistry
Joint Committee on Atomic and Molecular Physical data - working group on Data eXchange	JCAMP-DX	Standard	Chemistry Infared spectroscopy Mass spectrometry spectra Spectroscopy	All	ChemSpider	AnIML	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project Chemistry
MetaboLights	MTBLS	Database	Fluxomics Life Science Lipid Mass spectrometry spectra Metabolite Plus 3 more...	All	Rhea WikiPathways BRENDA OmicsDI	ISA-Tab CHEBI BTO PSI-MS CV nmrCV Plus 3 more...	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR node contributed resources
Metabolomics Workbench	MW	Database	Data sharing Life Science Metabolomics	All	OmicsDI	OmicsDI XML format mwTab	PLOS Recommended Repositories	Metabolomics Standards and Databases Open Science Prize H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
mz5	mz5	Standard	Life Science Mass spectrometry assay Ontology and terminology	All	None	HDF5 mzML	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
~~mzData~~	~~mzData~~	Standard	Life Science Mass spectrometry spectra Proteomics	Not applicable	None	mzML	None	Metabolomics Standards and Databases HUPO Proteomics Standards Initiative
mz Markup Language	mzML	Standard	Centrally registered identifier Life Science Mass spectrometry assay Mass spectrometry spectra Protein	All	MOPED MitoZoa PRIDE PeptideAtlas World-2DPAGE Plus 2 more...	mzQuantML imzML PSI SpML MIAPE mzData Plus 7 more...	EMBO Recommended Databases and Data Standards	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack FAIRDOM Community Standards HUPO Proteomics Standards Initiative
~~mzXML~~	~~mzXML~~	Standard	Life Science Mass spectrometry spectra Proteomics	Not applicable	MassIVE	mzML	None	Metabolomics Standards and Databases
Nuclear Magnetic Resonance Controlled Vocabulary	nmrCV	Standard	Assay Chemical screen Chemical structure Chemistry Metabolite Plus 3 more...	None	MTBLS HMDB BMRB OBO	CIMR NMR-ML	None	Metabolomics Standards and Databases OBO Foundry H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project Chemistry
Nuclear Magnetic Resonance Markup Language	NMR-ML	Standard	Chemical entity Chemical structure Life Science Metabolite Metabolomics Plus 2 more...	None	MTBLS GMD HMDB BMRB	nmrCV CIMR XML	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project eTRIKS Standards Starter Pack Chemistry
Simplified Molecular Input Line Entry Specification Format	SMILES	Standard	Chemistry Life Science Molecular entity Molecular structure	All	BitterDB Nematode.net CCD enviPath SwissLipids Plus 3 more...	None	None	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project

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