Recommendation

Scientific Data

A biologically-centered subset of Scientific Data's recommended repositories and standards. Please see the Scientific Data website for the full list of repositories and standards across all domains. Scientific Data is an open access, peer-reviewed Nature Research data journal published by Springer Nature.

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This recommendation is taken from the following policy:

Scientific Data Data Policy.

Record updated: Oct. 11, 2017, 11:51 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000001' by 'ScientificData' at 10:31, 05 Jan 2017 (approved):

	'description' has been modified:
		Before: A biologically-centered subset of Scientific Data's recommended repositories and standards. Please see the Scientific Data website for the full list of repositories and standards across all domains. Scientific Data is an open access, peer-reviewed Nature Research data journal published by Springer Nature.
		After: A biologically-centered subset of Scientific Data's recommended repositories and standards. Please see the Scientific Data website for the full list of repositories and standards across all domains. Scientific Data is an open access, peer-reviewed Nature Research data journal published by Springer Nature.

Showing records 1 - 50 of 110.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Ag Data Commons	Ag Data Commons	Database	Agricultural and Food Process Engineering Agriculture Agroecology Agronomy Animal Husbandry, Breeding and Hygiene Plus 19 more...	Agricultural products Agroecosystem Bioenergy Economics Geographical location Plus 8 more...	All Animalia Archaea Bacteria Chromista Plus 4 more...	ITIS	DataCite Metadata Schema FORCE11 DC Schema.org DC RDF Plus 2 more...	SciData Data Policy	AgBioData
Archaeology Data Service	ADS	Database	Classical Archaeology History Humanities Natural Sciences	None	None	None	None	SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	None
ArrayExpress	ArrayExpress	Database	Life Sciences	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas SMD DGVA FlyMine Plus 5 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 2 more...	UCL Child Open Health Research EMBO Recommended Databases and Data Standards HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data and Data Deposition Resources
Australian Antarctic Data Centre	AADC	Database	Atmospheric Science Biology Earth Sciences Environmental Sciences Geology Plus 4 more...	None	All	GBIF	None	PLOS Recommended Repositories SciData Data Policy	None
Australian Open Data Network Portal	AODN	Database	Natural Sciences Oceanography	Climate Marine environment	All	None	MCP of ISO 19115	SciData Data Policy	None
BioAssay Ontology	BAO	Standard	Biochemistry Biomedical Science Life Sciences	Assay Biological process Cell Chemical entity Molecular entity Plus 3 more...	All	PubChem	UO SIO OWL ENM BAO-GPCR	SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
Biological General Repository for Interaction Datasets	BioGRID	Database	Life Sciences	Gene Molecular interaction Protein	Arabidopsis thaliana Drosophila melanogaster Saccharomyces cerevisiae Schizosaccharomyces pombe	PhenoM SGD PomBase CTD APID Interactomes Plus 18 more...	MIRO MITAB PSI-MI XML	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories
Biological Magnetic Resonance Databank	BMRB	Database	Life Sciences	Molecular entity Nuclear Magnetic Resonance (NMR) spectroscopy Spectrum Structure	All	PDBe Protein Data Bank Japan RCSB PDB wwPDB	PDB NMR-STAR nmrCV CCPN data model NMR-ML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 19 more...	Data Citation Implementation
caNanoLab	caNanoLab	Database	Biomedical Science	Nanotechnology Bioactivity Nanoparticle Structure	Homo sapiens Mus musculus	None	NPO	PLOS Recommended Repositories Elsevier Data Policy SciData Data Policy Cell Press - Cell Metabolism - Information for Authors GigaScience - Minimum Standards of Reporting Checklist Plus 9 more...	Data Citation Implementation
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Medicinal Chemistry	Chemical structure Bioactivity Drug Small molecule	Not applicable	Guide to Pharmacology CP TargetMine WITHDRAWN	CHEBI	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy SciData Data Policy Plus 3 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
ClinicalTrials.gov	ClinicalTrials.gov	Database	Biomedical Science Preclinical and Clinical Studies	Disease Drug	Homo sapiens	PPMI EUCTR EudraCT	Protocol Registration Data Element Definitions CDISC CTR-XML	Elsevier Data Policy AHRQ Policy SciData Data Policy Lippincott Williams & Wilkins - Circulation - Research Guidelines Lippincott Williams & Wilkins - Circulation Research - Research Guidelines Plus 2 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Coherent X-ray Imaging Data Bank	CXIDB	Database	Life Sciences	Molecular structure X-ray diffraction Imaging	All	None	CXI EDMI-Functional	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 13 more...	Data Citation Implementation
Crystallography Open Database	COD	Database	None	None	None	None	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 12 more...	Data Citation Implementation Chemistry
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Life Sciences	Genetic polymorphism Genome	All	DGVA ClinVar DGV BovineMine	VarioML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Rockefeller University Press - Journal Of Cell Biology - Data Deposition Plus 34 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Genomic Variants Archive	DGVA	Database	Genomics Life Sciences	Genetic polymorphism Curated information Structure Sequence variant	All	ArrayExpress ENA EGA Ensembl dbVar Plus 1 more...	None	Springer Nature - Research Data Policies UCL Child Open Health Research HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 24 more...	Data Citation Implementation
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Life Sciences	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	ImmPort BioSample NSRR	VCF SRA-XML	Springer Nature Research Data Policy Type 4 IH Policy on sharing of model organisms for Biomedical Research Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards Plus 37 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Interacting Proteins	DIP	Database	Life Sciences	Protein interaction Protein	All	APID Interactomes STRING VirHostNet iRefWeb mentha Plus 1 more...	MIRO MITAB FASTA	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 8 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories International Molecular Exchange Consortium (IMEx)
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Sciences	Genetic polymorphism Single nucleotide polymorphism Genome	Anas platyrhynchos Gallus gallus Glycine max Homo sapiens Oreochromis niloticus Plus 2 more...	PolymiRTS T1DBase EVA ClinVar mirDNMR Plus 3 more...	FASTA	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 35 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories National Child Development Study (UK)
DNA Data Bank of Japan	DDBJ	Database	Life Sciences	DNA sequence data Amino acid sequence Genome Nucleotide Sequencing	All	GenBank ENA NextDB JGA	NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format INSDSeq Plus 1 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards Plus 48 more...	Data Citation Implementation
Donders Repository	DR	Database	OMIT	Brain Cognition Neuroimaging	Homo sapiens Mus musculus Rattus norvegicus	None	BIDS	SciData Data Policy	None
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org DOI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Elsevier Data Policy Plus 27 more...	Data Citation Implementation BMJ - British Medical Journal
eagle-i Research Resource Ontology	ERO	Standard	Biomedical Science Life Sciences	None	All	OBO	BRO VIVO-ISF OBI	SciData Data Policy	Cell Migration Standardisation Organisation OBO Foundry
EarthChem	EarthChem	Database	Chemistry Earth Sciences Environmental Sciences Natural Sciences	None	Not applicable	IEDA Data Collections MGDS SESAR Catalog	None	Elsevier Data Policy SciData Data Policy Cell Press - Neuron - Information for Authors Cell Press - Cell Metabolism - Information for Authors AGU Policy Plus 5 more...	Chemistry
Electron Microscopy Data Bank	EMDB	Database	Life Sciences	X-ray diffraction Electron density map Microscopy Structure	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 30 more...	Data Citation Implementation
Environmental Data Initiative Data Repository	EDI	Database	Agriculture Atmospheric Science Biology Botany Earth Sciences Plus 6 more...	None	All	None	EML	PLOS Recommended Repositories SciData Data Policy	None
Environment Ontology	ENVO	Standard	Ecology Environmental Sciences Life Sciences Nutritional Science Public Health and Epidemiology	Disease Environmental material Marine metagenome Microbiome	Algae Archaea Bacteria Eukaryota Fungi Plus 3 more...	GOLD Gramene MCDRP OBO MeRy-B	CHEBI MIxS - MIMARKS OBO_REL NCBITAXON BFO Plus 7 more...	SciData Data Policy	OBO Foundry
Eukaryotic Pathogen Database Resources	EuPathDB	Database	Biomedical Science Life Sciences	Genome Orthologous Pathogen	Anncaliia Babesia Crithidia Cryptosporidium Edhazardia Plus 19 more...	FungiDB CryptoDB GiardiaDB MicrosporidiaDB PlasmoDB Plus 4 more...	GFF3 OBI FASTA	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories ELIXIR UK node resources
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Sciences Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics Life Sciences	DNA structural variation Genetic polymorphism Genotype Sequencing	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 25 more...	Data Citation Implementation
Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	Database	Life Sciences Metabolomics	Enzyme Reaction data Metabolite	All	None	SBML CellML	PLOS Recommended Repositories SciData Data Policy GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
Experimental Factor Ontology	EFO	Standard	Functional Genomics Life Sciences	Assay Independent variable	All	BioSD Expression Atlas SCDE ArrayExpress KUPKB Plus 3 more...	FAANG metadata sample specification standard FAANG metadata experiment specification standard UBERON CSEO	SciData Data Policy	Cell Migration Standardisation Organisation eTRIKS Standards Starter Pack
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Sciences Environmental Sciences Humanities Plus 2 more...	None	All	None	Schema.org BioDBCore Bioschemas SRAO DRAO Plus 1 more...	UCL Child Open Health Research EMBO Recommended Databases and Data Standards HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 10 more...	ELIXIR UK node resources
figshare	figshare	Database	Data visualization	Image	All	OSF	Schema.org DOI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 26 more...	Data Citation Implementation
FlowRepository	FlowRepository	Database	Life Sciences	Flow cytometry assay	All	None	FuGEFlow FCS MIFlowCyt Gating-ML	PLOS Recommended Repositories SciData Data Policy Cell Press - Neuron - Information for Authors Cell Press - Cell Host & Microbe - Information for Authors Cell Press - Cell Metabolism - Information for Authors Plus 8 more...	Data Citation Implementation
FlyBase	FlyBase	Database	Anatomy Life Sciences	Bibliography Citation Clone library Gene Ontology enrichment Gene name Plus 15 more...	Drosophila Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Plus 8 more...	DRSC-FGR SGD WormBase GenomeRNAi BDGP Plus 8 more...	SO FB-DV FBbi DOID FBsp Plus 9 more...	PLOS Recommended Repositories Elsevier Data Policy Rockefeller University Press - Journal Of Cell Biology - Data Deposition SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Plus 2 more...	Open Science Prize NIH-supported data repositories
GenBank	GenBank	Database	Life Sciences	DNA sequence data Nucleic acid sequence Disease Gene Genome	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 3 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Gene Expression Omnibus	GEO	Database	Life Sciences	DNA microarray Gene expression data Genome	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 5 more...	MIAME/Env SOFT MIAME MINiML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
GenomeRNAi	GenomeRNAi	Database	Life Sciences	RNA interference	Drosophila melanogaster Homo sapiens	FlyBase FlyMine	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 4 more...	Data Citation Implementation
Global Biodiversity Information Facility	GBIF	Database	Biodiversity Bioinformatics Life Sciences	Taxonomic classification	All	Scratchpads Brazilian Flora 2020 REFLORA Atlas of Living Australia IPT - GBIF Australia Repository GBIF Spain IPT - GBIF Spain Repository Plus 25 more...	TAPIR ABCD EML DwC	PLOS Recommended Repositories SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation Global Biodiversity Information Facility (GBIF) international open data infrastructure
G-Node Data Infrastructure Services	GIN	Database	Neuroscience OMIT	None	All	None	odML	PLOS Recommended Repositories SciData Data Policy	None
Harvard Dataverse	Harvard Dataverse	Database	Data Management	Experiment metadata	All	Scholars Portal Dataverse TDR DataverseNL	Schema.org DOI	PLOS Recommended Repositories Elsevier Data Policy SciData Data Policy Cell Press - Neuron - Information for Authors Taylor and Francis Data Policy Plus 10 more...	None
High Energy Physics Data Repository	HEPData	Database	Chemistry Natural Sciences Physics	None	Not applicable	None	Schema.org	PLOS Recommended Repositories Elsevier Data Policy SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	Chemistry
Image Data Resource	IDR	Database	Life Sciences	Biological imaging High-content screen Super-resolution microscopy	Arabidopsis thaliana Drosophila Homo sapiens Mus musculus Saccharomyces cerevisiae Plus 2 more...	Ensembl OMERO	CMPO EDMI-Functional OME-XML GO	SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	Euro-BioImaging
Immunology Database and Analysis Portal	ImmPort	Database	Biomedical Science Immunology Life Sciences Preclinical and Clinical Studies	None	Homo sapiens Mus musculus	GEO SRA Gene dbGaP UniProtKB	OBI GO MIAME MIFlowCyt FCS Plus 4 more...	SciData Data Policy	Open Science Prize NIH-supported data repositories
Influenza Research Database	IRD	Database	Biomedical Science Genomics Proteomics	Gene expression data Sequence feature Structure	Influenza virus	GenBank CSA RefSeq BEI RCSB PDB Plus 1 more...	OBI IDO IAO OGMS CLUSTAL-W Alignment Format Plus 6 more...	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories
IntAct molecular interaction database	IntAct	Database	Life Sciences Ontology and Terminology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 16 more...	CHEBI MIRO MITAB PSI-PAR XML PSI-MI XML Plus 5 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 10 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data and Data Deposition Resources
Integrated Taxonomic Information System	ITIS	Database	Life Sciences	Taxonomic classification	All	Ag Data Commons	None	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation
International Neuroimaging Data-Sharing Initiative	INDI	Database	Biomedical Science Life Sciences	Diffusion tensor imaging Functional magnetic resonance imaging Neuroimaging Phenotype	Homo sapiens	NITRC ABIDE	MIfMRI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 6 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Japanese Genotype-phenotype Archive	JGA	Database	Biomedical Science Epigenetics Life Sciences	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	DDBJ	VCF SRA-XML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 2 (for life sciences) SciData Data Policy Plus 3 more...	None
JRC Data Catalogue	JRC Data Catalogue	Database	Engineering Science Life Sciences Natural Sciences Social Sciences Social and Behavioural Sciences	Economics	All	None	DCAT ADMS	SciData Data Policy JRC Data Policy	None

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