FAIRsharing Collection: Tripal

Tripal

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content Management Systems (CMS). Tripal is licensed under the GNU General Public License version 2. Genomics, genetics, breeding and other biological data are increasingly complicated and time consuming to publish online for other researchers to search, browse and make discoveries. Tripal provides a framework to reduce the complexity of creating such a site, and provides access to a community of similar groups that share community-standards, and interact to address questions and learn best practices for sharing, storing and visualizing complex biological data. This collection lists all FAIRsharing records for resources built using the Tripal toolkit.

This record is maintained by: bcondon ORCID , spficklin , mestato

Record added: Feb. 27, 2018, 2:42 p.m..
Record updated: March 1, 2018, 9:27 p.m. by The FAIRsharing Team.

Homepage Reference

Scope and data types

Biology

Life Science

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Publications

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.

Sanderson LA,Ficklin SP,Cheng CH,Jung S,Feltus FA,Bett KE,Main D
Database (Oxford) 2013

View Paper (PubMed) View Paper (DOI)

17 records in view

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Banana Genome Hub	BGH	Database	Gene Ontology (GO) enrichment Genome Genome annotation Life Science Transcriptomics	Musa	MetaCyc GreenPhyl TropGENE DB MGIS	FASTA Sequence Format GFF3 GO	None	Tripal
Cacao Genome Database	CGD	Database	Agriculture Botany Breeding Genomics Life Science Plus 1 more...	Theobroma cacao	None	None	None	Tripal
Citrus Genome Database	CGD	Database	Botany Breeding Genetics Genomics Life Science Plus 1 more...	Citrus Citrus clementina Citrus sinensis Poncirus	None	None	None	Tripal
Cool Season Food Legume Genome Database	CSFL	Database	Agriculture Breeding Genetics Genomics Life Science Plus 1 more...	Cicer arietinum Lens culinaris Pisum sativum Vicia faba	None	None	None	Tripal AgBioData
CottonGen	CottonGen	Database	Agriculture Breeding Genomics Plant Genetic Resources	Gossypium	None	None	None	Tripal AgBioData
Cucurbit Genomics Database	CuGenDB	Database	Agriculture Genetics Genomics Genotype Life Science Plus 2 more...	Cucurbitaceae	None	None	None	Tripal
GeneNet Engine	GeneNet Engine	Database	Biomarker Co-expression Genetics Genotype Life Science Plus 3 more...	Arabidopsis thaliana Oryza sativa Zea mays	None	None	None	Tripal
Genome Database for Rosaceae	GDR	Database	Annotation DNA sequence data Gene Genome Genotype Plus 5 more...	Rosaceae	None	PO TO FASTA Sequence Format GO PECO	None	Tripal AgBioData
Genome Database for Vaccinium	GDV	Database	Agriculture Biology Genetics Genomics Life Science Plus 1 more...	Vaccinium	None	None	None	Tripal AgBioData
Hardwood Genomics Project	HWG	Database	Gene expression data Genetic map Genome map Life Science Nucleic acid sequence	Acer saccharum Alnus rhombifolia Alnus rubra Castanea crenata Castanea dentata Plus 18 more...	GOA SRA KEGG	SO NCBITAXON FASTA Sequence Format	None	Tripal AgBioData
i5k Workspace@NAL	i5k Workspace@NAL	Database	Biology Genomics Life Science	Arthropoda	BIPAA	None	None	Tripal AgBioData
KnowPulse	KnowPulse	Database	Agriculture Genetics Genomics Life Science	Cicer arietinum Lens culinaris Phaseolus vulgaris Pisum sativum Vicia faba	None	None	None	Tripal
Legume Information System	LIS	Database	Agriculture Genetics Genomics Life Science Plant Phenotypes and Traits	Arachis duranensis Arachis hypogaea Arachis ipaensis Cajanus cajan Cicer arietinum Plus 12 more...	PeanutBase	None	None	Tripal AgBioData
Medicago truncatula Genome Database	MTGD	Database	Botany Genome annotation Genomics Life Science	Medicago truncatula	None	None	None	Tripal
Musa Germplasm Information System	MGIS	Database	Biodiversity DNA structural variation Genotype Life Science Phenotype	Ensete Musa	BGH	MCPD CO	None	Tripal
PeanutBase	PeanutBase	Database	Agriculture Genetic map Genetic marker Genomics Life Science Plus 3 more...	Arachis Arachis duranensis Arachis hypogaea Arachis ipaensis	LIS	PO MIxS CO	None	Tripal AgBioData
Planosphere	Planosphere	Database	Anatomy Developmental biology Life Science Organ Organelle Plus 1 more...	Schmidtea mediterranea	None	PLANA	None	Tripal

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