Data Citation Implementation

The Data Citation Implementation Project, a pilot of the NIH BD2K bioCADDIE, provides authoritative guidance and support on all aspects of data citation. Among other goals, it is set to create a joint publisher-curated list of appropriate data deposition repositories in the life sciences, developed in collaboration with BioSharing.

This record is maintained by: FAIRsharingTeam , AmyeKenall

Record updated: Aug. 1, 2016, 3:18 p.m. by The FAIRsharing Team.

Homepage

Taxonomic range

All

Knowledge Domains BETA

Subjects BETA

User-defined Tags

Data sharing

View as Graph

Showing records 1 - 50 of 71.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Addgene	Addgene	Database	Life Sciences	Bibliography Deoxyribonucleic acid Plasmid	All	None	GenBank Sequence Format RRID FASTA	Springer Nature - Nature Photonics - Availability of Data and materials Springer Nature - Nature Genetics - Availability of Data and materials Springer Nature - Nature Medicine - Availability of Data and materials Springer Nature - Nature Chemical Biology - Availability of Data and materials Springer Nature - Nature Cell Biology - Availability of Data and materials Plus 9 more...	Data Citation Implementation eTRIKS Standards Starter Pack
ArrayExpress	ArrayExpress	Database	Life Sciences	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas SMD DGVA FlyMine Plus 5 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 2 more...	UCL Child Open Health Research EMBO Recommended Databases and Data Standards HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data and Data Deposition Resources
Biological General Repository for Interaction Datasets	BioGRID	Database	Life Sciences	Gene Molecular interaction Protein	Arabidopsis thaliana Drosophila melanogaster Saccharomyces cerevisiae Schizosaccharomyces pombe	PhenoM SGD PomBase CTD APID Interactomes Plus 18 more...	MIRO MITAB PSI-MI XML	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories
Biological Magnetic Resonance Databank	BMRB	Database	Life Sciences	Molecular entity Nuclear Magnetic Resonance (NMR) spectroscopy Spectrum Structure	All	PDBe Protein Data Bank Japan RCSB PDB wwPDB	PDB NMR-STAR nmrCV CCPN data model NMR-ML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 19 more...	Data Citation Implementation
caNanoLab	caNanoLab	Database	Biomedical Science	Nanotechnology Bioactivity Nanoparticle Structure	Homo sapiens Mus musculus	None	NPO	PLOS Recommended Repositories Elsevier Data Policy SciData Data Policy Cell Press - Cell Metabolism - Information for Authors GigaScience - Minimum Standards of Reporting Checklist Plus 9 more...	Data Citation Implementation
ChEMBL	ChEMBL	Database	Biochemistry Drug Discovery Medicinal Chemistry	Chemical structure Bioactivity Drug Small molecule	Not applicable	Guide to Pharmacology CP TargetMine WITHDRAWN	CHEBI	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy SciData Data Policy Plus 3 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
ClinicalTrials.gov	ClinicalTrials.gov	Database	Biomedical Science Preclinical and Clinical Studies	Disease Drug	Homo sapiens	PPMI EUCTR EudraCT	Protocol Registration Data Element Definitions CDISC CTR-XML	Elsevier Data Policy AHRQ Policy SciData Data Policy Lippincott Williams & Wilkins - Circulation - Research Guidelines Lippincott Williams & Wilkins - Circulation Research - Research Guidelines Plus 2 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Coherent X-ray Imaging Data Bank	CXIDB	Database	Life Sciences	Molecular structure X-ray diffraction Imaging	All	None	CXI EDMI-Functional	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 13 more...	Data Citation Implementation
Crystallography Open Database	COD	Database	None	None	None	None	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 12 more...	Data Citation Implementation Chemistry
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Life Sciences	Genetic polymorphism Genome	All	DGVA ClinVar DGV BovineMine	VarioML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Rockefeller University Press - Journal Of Cell Biology - Data Deposition Plus 34 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Genomic Variants Archive	DGVA	Database	Genomics Life Sciences	Genetic polymorphism Curated information Structure Sequence variant	All	ArrayExpress ENA EGA Ensembl dbVar Plus 1 more...	None	Springer Nature - Research Data Policies UCL Child Open Health Research HRB Open Research PLOS Recommended Repositories MNI Open Research Plus 24 more...	Data Citation Implementation
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Life Sciences	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	ImmPort BioSample NSRR	VCF SRA-XML	Springer Nature Research Data Policy Type 4 IH Policy on sharing of model organisms for Biomedical Research Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards Plus 37 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Interacting Proteins	DIP	Database	Life Sciences	Protein interaction Protein	All	APID Interactomes STRING VirHostNet iRefWeb mentha Plus 1 more...	MIRO MITAB FASTA	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 8 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories International Molecular Exchange Consortium (IMEx)
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Sciences	Genetic polymorphism Single nucleotide polymorphism Genome	Anas platyrhynchos Gallus gallus Glycine max Homo sapiens Oreochromis niloticus Plus 2 more...	PolymiRTS T1DBase EVA ClinVar mirDNMR Plus 3 more...	FASTA	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 35 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories National Child Development Study (UK)
DNA Data Bank of Japan	DDBJ	Database	Life Sciences	DNA sequence data Amino acid sequence Genome Nucleotide Sequencing	All	GenBank ENA NextDB JGA	NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format INSDSeq Plus 1 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards Plus 48 more...	Data Citation Implementation
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org DOI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Elsevier Data Policy Plus 27 more...	Data Citation Implementation BMJ - British Medical Journal
Electron Microscopy Data Bank	EMDB	Database	Life Sciences	X-ray diffraction Electron density map Microscopy Structure	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 30 more...	Data Citation Implementation
Eukaryotic Pathogen Database Resources	EuPathDB	Database	Biomedical Science Life Sciences	Genome Orthologous Pathogen	Anncaliia Babesia Crithidia Cryptosporidium Edhazardia Plus 19 more...	FungiDB CryptoDB GiardiaDB MicrosporidiaDB PlasmoDB Plus 4 more...	GFF3 OBI FASTA	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories ELIXIR UK node resources
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Sciences Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics Life Sciences	DNA structural variation Genetic polymorphism Genotype Sequencing	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 25 more...	Data Citation Implementation
Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	Database	Life Sciences Metabolomics	Enzyme Reaction data Metabolite	All	None	SBML CellML	PLOS Recommended Repositories SciData Data Policy GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
figshare	figshare	Database	Data visualization	Image	All	OSF	Schema.org DOI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 26 more...	Data Citation Implementation
FlowRepository	FlowRepository	Database	Life Sciences	Flow cytometry assay	All	None	FuGEFlow FCS MIFlowCyt Gating-ML	PLOS Recommended Repositories SciData Data Policy Cell Press - Neuron - Information for Authors Cell Press - Cell Host & Microbe - Information for Authors Cell Press - Cell Metabolism - Information for Authors Plus 8 more...	Data Citation Implementation
GenBank	GenBank	Database	Life Sciences	DNA sequence data Nucleic acid sequence Disease Gene Genome	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 3 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Gene Expression Omnibus	GEO	Database	Life Sciences	DNA microarray Gene expression data Genome	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 5 more...	MIAME/Env SOFT MIAME MINiML	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
GenomeRNAi	GenomeRNAi	Database	Life Sciences	RNA interference	Drosophila melanogaster Homo sapiens	FlyBase FlyMine	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 4 more...	Data Citation Implementation
Giga Science Database	GigaDB	Database	Computational Biology Genetics Genomics Life Sciences Proteomics	Gene expression data Imaging Sequencing Software	All	None	ISA-Tab Bioschemas NCBITAXON	PLOS Recommended Repositories GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
Global Biodiversity Information Facility	GBIF	Database	Biodiversity Bioinformatics Life Sciences	Taxonomic classification	All	Scratchpads Brazilian Flora 2020 REFLORA Atlas of Living Australia IPT - GBIF Australia Repository GBIF Spain IPT - GBIF Spain Repository Plus 25 more...	TAPIR ABCD EML DwC	PLOS Recommended Repositories SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation Global Biodiversity Information Facility (GBIF) international open data infrastructure
HUGO Gene Nomenclature Committee	HGNC	Database	Life Sciences Ontology and Terminology	Gene name Gene	Homo sapiens	STRING HPRD MGDD CRC Atlas The Chemical Probes Portal Plus 4 more...	None	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 4 more...	Data Citation Implementation
Influenza Research Database	IRD	Database	Biomedical Science Genomics Proteomics	Gene expression data Sequence feature Structure	Influenza virus	GenBank CSA RefSeq BEI RCSB PDB Plus 1 more...	OBI IDO IAO OGMS CLUSTAL-W Alignment Format Plus 6 more...	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation Open Science Prize NIH-supported data repositories
IntAct molecular interaction database	IntAct	Database	Life Sciences Ontology and Terminology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 16 more...	CHEBI MIRO MITAB PSI-PAR XML PSI-MI XML Plus 5 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Plus 10 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data and Data Deposition Resources
Integrated Taxonomic Information System	ITIS	Database	Life Sciences	Taxonomic classification	All	Ag Data Commons	None	PLOS Recommended Repositories SciData Data Policy	Data Citation Implementation
International Neuroimaging Data-Sharing Initiative	INDI	Database	Biomedical Science Life Sciences	Diffusion tensor imaging Functional magnetic resonance imaging Neuroimaging Phenotype	Homo sapiens	NITRC ABIDE	MIfMRI	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 6 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
MetaboLights	MTBLS	Database	Life Sciences Metabolomics	Mass spectrometry spectra Lipid Metabolite Nuclear Magnetic Resonance (NMR) spectroscopy Publication	All	Rhea WikiPathways BRENDA OmicsDI	nmrCV CHEBI BTO ISA-Tab PSI-MS CV Plus 3 more...	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research EMBO Recommended Databases and Data Standards Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR Core Data and Data Deposition Resources
MGnify	MGnify	Database	Biomedical Science Environmental Sciences Life Sciences	Annotation DNA sequence data Gene prediction Metagenome Sequence annotation Plus 4 more...	All Anopheles gambiae Arabidopsis thaliana Bos indicus Bos taurus Plus 6 more...	ENA	GO MIxS - MIGS/MIMS FASTA FASTQ Sequence and Sequence Quality Format MIxS	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 13 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
miRBase Sequence Database	miRBase	Database	Life Sciences	Crowdsourcing RNA sequence Gene Micro RNA Ribonucleic acid	All	PolymiRTS miRNEST FlyMine GREENC MirGeneDB Plus 2 more...	EMBL sequence format FASTA	PLOS Recommended Repositories Cold Spring Harbor Lab Press - Genome Research GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 1 more...	Data Citation Implementation Open Science Prize
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource	MGI	Database	Life Sciences Ontology and Terminology	Cytogenetic map Gene Ontology enrichment Gene expression data Gene name Genetic polymorphism Plus 11 more...	Mus musculus	FlyBase MitoMiner SGD WormBase Ensembl Plus 8 more...	SO DOID MP HP GO Plus 3 more...	Elsevier Data Policy SciData Data Policy Elsevier - Current Opinion in Cell Biology - Guide for Authors	Data Citation Implementation Open Science Prize NIH-supported data repositories
National Addiction & HIV Data Archive Program (NAHDAP)	NAHDAP	Database	Biomedical Science	addiction Disease Drug	Homo sapiens Human immunodeficiency virus	None	None	UCL Child Open Health Research HRB Open Research PLOS Recommended Repositories MNI Open Research AAS Policy Plus 4 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
National Database for Autism Research (NDAR)	NDAR	Database	Biomedical Science	Autistic disorder Behavior Disease	Homo sapiens	RDoCdb NDCT	NIFTI DICOM	PLOS Recommended Repositories SciData Data Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council	Data Citation Implementation Open Science Prize NIH-supported data repositories
National Database for Clinical Trials related to Mental Illness	NDCT	Database	Biomedical Science Health Sciences Preclinical and Clinical Studies	Mental health	Homo sapiens	NDAR RDoCdb	None	SciData Data Policy	Data Citation Implementation
NCBI BioSample	BioSample	Database	Life Sciences	DNA structural variation Gene expression data Sequence Assay Cell line Plus 2 more...	All	GenBank GEO SRA dbGaP ENCODE Plus 1 more...	BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Springer Nature - Nature Photonics - Availability of Data and materials Plus 12 more...	Data Citation Implementation
NCBI Trace Archives	NCBI Trace Archives	Database	Life Sciences	Multiple sequence alignment Sequence	All	None	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 33 more...	Data Citation Implementation
NeuroMorpho.Org	NeuroMorpho.Org	Database	Life Sciences	Cell morphology Neuron	Metazoa	None	None	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Elsevier Data Policy Plus 8 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
NeuroVault	NeuroVault	Database	Biomedical Science Life Sciences Neurobiology	Functional magnetic resonance imaging Neuroimaging	Homo sapiens	None	NIDM	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Cell Press - Neuron - Information for Authors Plus 15 more...	Data Citation Implementation
Nucleic Acids Database	NDB	Database	Life Sciences	Nucleic acid sequence Deoxyribonucleic acid Ribonucleic acid	All	MINAS	PDB RNAO PDBx/mmCIF	EMBO Recommended Databases and Data Standards Rockefeller University Press - Journal Of Cell Biology - Data Deposition Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
Open Connectome Project	OCP	Database	Life Sciences Neurobiology	None	Caenorhabditis elegans Drosophila melanogaster Felis catus Homo sapiens Macaca mulatta Plus 4 more...	None	None	SciData Data Policy	Data Citation Implementation Open Science Prize
OpenNeuro	OpenNeuro	Database	Biomedical Science Life Sciences Neurobiology	Cognition Imaging Magnetic resonance imaging	Homo sapiens	None	BIDS	Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 1 UCL Child Open Health Research HRB Open Research Plus 24 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Open Science Framework	OSF	Database	Life Sciences Psychology	Cancer Data storage Study design	All	figshare Mendeley Data DataverseNL	None	UCL Child Open Health Research HRB Open Research PLOS Recommended Repositories MNI Open Research AAS Policy Plus 8 more...	Data Citation Implementation Open Science Prize
PANGAEA - Data Publisher for Earth and Environmental Science	PANGAEA	Database	Agriculture Atmospheric Science Biology Chemistry Chemistry Plus 9 more...	Marine environment	All	BacDive	DataCite Metadata Schema Micro B3 Schema.org DC DwC Plus 3 more...	UCL Child Open Health Research HRB Open Research PLOS Recommended Repositories MNI Open Research Elsevier Data Policy Plus 13 more...	Data Citation Implementation
PeptideAtlas	PeptideAtlas	Database	Life Sciences	Annotation Mass spectrometry spectra Protein Structure	Apis Bos taurus Caenorhabditis elegans Candida Danio rerio Plus 11 more...	ProteomeXchange OmicsDI	mzML OmicsDI XML format FASTA	EMBO Recommended Databases and Data Standards PLOS Recommended Repositories Rockefeller University Press - Journal Of Cell Biology - Data Deposition SciData Data Policy Cell Press - Neuron - Information for Authors Plus 12 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories

We need your help!

Developed by

Contact Us

About FAIRsharing