FAIRsharing

Showing records 1 - 50 of 1055.

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
GenBank	GenBank	Database	DNA sequence data Gene Genome Life Science Nucleic acid sequence	All	DDBJ GENI-ACT IRD ENA BioSample Plus 2 more...	FASTA Sequence Format SRA-XML GenBank Sequence Format AGP format FASTQ Sequence and Sequence Quality Format Plus 1 more...	Scientific Data Data Policy American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability Nature Publishing Group - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Press Recommended Databases and Data Standards Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
GlycoNAVI	GlycoNAVI	Database	Chemistry Glycomics Life Science Non-carbohydrate moieties Organic chemistry Plus 1 more...	All	None	CHEBI	None	None
ADHDgene	ADHDgene	Database	Biomedical Science Chromosomal region Citation Gene Genetics Plus 1 more...	Homo sapiens	None	GFF3 GO	None	None
Allele frequency resource for research and teaching	ALFRED	Database	Allele Gene frequency Genetic polymorphism Life Science	Homo sapiens	None	ARLEQUIN Project Format	None	None
Animal Transcription Factor Database	AnimalTFDB	Database	Annotation Gene Gene Ontology (GO) enrichment Gene feature Life Science Plus 6 more...	Ailuropoda melanoleuca Anolis carolinensis Caenorhabditis elegans Homo sapiens	REGULATOR	FASTA Sequence Format	None	None
Apo and Holo structures DataBase	AH-DB	Database	Life Science Protein Structure alignment (pair)	All	None	FASTA Sequence Format	None	None
Aspergillus Genome Database	ASPGD	Database	Curated information Gene Gene model annotation Genome Life Science Plus 2 more...	Aspergillus Aspergillus clavatus Aspergillus flavus Aspergillus fumigatus Aspergillus niger Plus 4 more...	None	GFF3 FASTQ Sequence and Sequence Quality Format FASTA Sequence Format GO	None	None
BioSample at the European Bioinformatics Institute	BioSD	Database	Biological sample annotation Life Science	All	ArrayExpress ENA PRIDE	FAANG metadata sample specification standard FAANG metadata experiment specification standard EFO Sample Tabular Format Bioschemas Plus 1 more...	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
Bitter Compounds Database	BitterDB	Database	Life Science Receptor	Homo sapiens	None	SDF JPEG Format SMILES FASTA Sequence Format	None	None
BuG@Sbase	BuG@Sbase	Database	Comparative genomics Gene expression data Life Science	Campylobacter Clostridium Haemophilus Listeria Mycobacterium Plus 4 more...	None	MO MAGE-TAB MIAME	None	None
Bacterial protein tYrosine Kinase database	BYKdb	Database	Protein sequence	Bacteria	None	CLUSTAL-W Alignment Format UniProtKB XML Format CLUSTAL-W Dendrogram Guide File Format FASTA Sequence Format	None	None
Central Aspergillus Data REpository	CADRE	Database	DNA sequence Functional genomics Gene Ontology (GO) enrichment Gene model annotation Gene name Plus 6 more...	Aspergillus Neosartorya fischeri	Aspergillus Genomes	GFF GenBank Sequence Format GFF3 EMBL sequence format FASTA Sequence Format Plus 1 more...	None	None
canSAR	canSAR	Database	Annotation Biomedical Science Cancer Cellular assay Chemical screen Plus 6 more...	All	None	SDF MIABE	None	None
CAPS-DB : a structural classification of helix-capping motifs	CAPS-DB	Database	Atomic coordinate Life Science Protein structure Sequence annotation Structure	All	None	PDB FASTA Sequence Format GO	None	None
ChEMBL: a large-scale bioactivity database for drug discovery	ChEMBL	Database	Approved drug Biomedical Science Peptide Small molecule	All	Guide to Pharmacology The Chemical Probes Portal DrugCentral TCRD Open Targets Plus 2 more...	CHEBI PSI-MI XML PSI-MI CV MITAB FASTA Sequence Format Plus 2 more...	Scientific Data Data Policy Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines Plus 3 more...	Data Citation Implementation ELIXIR node contributed resources
Crystallography Open Database	COD	Database	Atomic coordinate Experiment metadata Life Science X-ray diffraction	All	None	CIF	Scientific Data Data Policy Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Plus 11 more...	Data Citation Implementation
ConoServer	ConoServer	Database	Classification Conopeptide activity Conopeptide mass Conotoxin Cysteine framework classification Plus 12 more...	Conus	None	CLUSTAL-W Alignment Format FASTA Sequence Format CLUSTAL-W Dendrogram Guide File Format	None	EMBL-ABR
CoryneRegNet 6.0 - Corynebacterial Regulation Network	CoryneRegNet	Database	DNA sequence Gene Gene Ontology (GO) enrichment Life Science	Aurimucosum ATCC 700975 Corynebacterium efficiens Corynebacterium glutamicum R Corynebacterium jeikeium K411 Corynebacterium pseudotuberculosis 1002 Plus 7 more...	None	FASTA Sequence Format GenBank Sequence Format	None	None
Dragon Antimicrobial Peptide Database	DAMPD	Database	Antimicrobial Curated information Life Science Peptide	All	UniProtKB	FASTA Sequence Format GenBank Sequence Format JPEG Format UniProtKB XML Format	None	None
Database of Aligned Ribosomal Complexes	DARC	Database	Life Science Protein structure Ribosomal RNA (rRNA)	All	None	BRIX generated O Format PDB	None	None
DOMMINO: A comprehensive database of macromolecular interactions	DOMMINO: A comprehensive database of macromolecular interactions	Database	Life Science Molecular interaction Structure	All	None	None	None	None
Database of Differentially Expressed Proteins in Human Cancer	dbDEPC	Database	Cancer Differential gene expression analysis Differential protein expression analysis Gene Ontology (GO) enrichment Genetic polymorphism Plus 4 more...	Homo sapiens Mus musculus Rattus norvegicus	None	GO	None	None
Database of Bacterial Exotoxins for Human	DBETH	Database	Exotoxin Life Science Pathogenic bacterial exotoxin Protein sequence Structure	Actinobacillus Aeromonas Arcanobacterium Bacillus Bordetella Plus 21 more...	None	GO	None	None
DataBase of Transcriptional Start Sites	DBTSS	Database	Life Science Transcription factor (TF)	Cyanidioschyzon merolae Homo sapiens Macaca fascicularis Mus musculus Pan troglodytes Plus 2 more...	None	FASTA Sequence Format	None	None
DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks	DistiLD	Database	Disease Gene Genome-wide association study (GWAS) Life Science Single nucleotide polymorphism (SNP)	Homo sapiens	TCRD	ICD-10	None	NIH-supported data repositories
The DNA Data Bank of Japan	DDBJ	Database	Amino acid sequence DNA sequence data Genome Life Science Nucleotide Plus 1 more...	All	GenBank ENA NextDB JGA	FASTA Sequence Format GenBank Sequence Format FASTQ Sequence and Sequence Quality Format ISND sequence record XML	Scientific Data Data Policy Nature Publishing Group - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Press Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 48 more...	Data Citation Implementation
DNAtraffic	DNAtraffic	Database	Amino acid sequence Citation Cross linking DNA damage Disease Plus 14 more...	Arabidopsis thaliana Caenorhabditis elegans Drosophila melanogaster Escherichia coli Homo sapiens Plus 3 more...	None	None	None	None
doRiNA	doRiNA	Database	Exon Gene expression Life Science Micro RNA (miRNA) Micro RNA (miRNA) target site Plus 1 more...	Caenorhabditis elegans Homo sapiens Mus musculus	None	None	None	None
Human Disease-Related Viral Integration Sites	Dr.VIS	Database	Biomedical Science Chromosomal region DNA sequence Disease Gene Plus 2 more...	Barr virus Hepatitis b virus Homo sapiens Human papillomavirus Merkel cell polyomavirus Plus 1 more...	None	FASTA Sequence Format	None	None
EcoliWiki: A Wiki-based community resource for Escherichia coli	EcoliWiki: A Wiki-based community resource for Escherichia coli	Database	Allele Bioinformatics tools and formats Cellular localization Centrally registered identifier Cis element Plus 38 more...	Escherichia coli	RegulonDB	SO CHEBI GO Portable Network Graphics Genome Annotation File version 1 Plus 6 more...	None	None
Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups	eggNOG	Database	Annotation Gene Life Science Multiple sequence alignment Newick tree Plus 1 more...	All	None	FASTA Sequence Format	None	None
Eukaryotic Linear Motifs	ELM	Database	Computational predictions Eukaryotic Linear Motif Gene Ontology (GO) enrichment Life Science Polypeptide motif Plus 5 more...	Eukaryota	MobiDB MFIB DIBS	PSI-MI CV UniProtKB XML Format FASTA Sequence Format GO NCBITAXON	None	None
Encyclopedia of DNA Elements at UCSC	ENCODE	Database	Cap Analysis Gene Expression (CAGE) Chromatin Interaction Analysis by Paired-End Tag (ChIA-PET) sequencing Chromatin binding Chromatin immunoprecipitation - DNA sequencing (ChIP-seq) DNA methylation Plus 6 more...	Homo sapiens Mus musculus	ENCODE	BigBed BED FASTQ Sequence and Sequence Quality Format GTF bigWig Track Format Plus 3 more...	None	None
eQuilibrator - the biochemical thermodynamics calculator	eQuilibrator - the biochemical thermodynamics calculator	Database	Life Science Thermodynamics	All	None	None	None	None
ExoCarta	ExoCarta	Database	Annotation Extracellular exosome Life Science Lipid Messenger RNA (mRNA) Plus 2 more...	All	None	GO	None	None
FlyBase	FlyBase	Database	Allele Anatomy Bibliography Cell line Chromosomal aberration Plus 17 more...	Drosophila Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Plus 8 more...	DRSC-FGR SGD WormBase GenomeRNAi BDGP Plus 5 more...	SO FB-DV FBbi GO FBsp Plus 8 more...	Scientific Data Data Policy Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition Rockefeller University Press - Journal Of Cell Biology - Data Deposition Elsevier - Current Opinion in Cell Biology - Guide for Authors PLOS Recommended Data Repositories Plus 1 more...	Open Science Prize NIH-supported data repositories
DRSC Functional Genomics Resources	DRSC-FGR	Database	Cell line Life Science RNA interference (RNAi) RNAi screening	Drosophila melanogaster	FlyBase	FASTA Sequence Format GO	None	None
Networks of Functional Coupling of proteins	FunCoup	Database	Annotation Biological regulation Functional association Genetic interaction Genome Plus 5 more...	Arabidopsis thaliana Caenorhabditis elegans Canis familiaris Ciona intestinalis Danio rerio Plus 6 more...	HPA	GO	None	None
Fungal and Oomycete genomics resource	FungiDB	Database	Citation Crowdsourcing DNA sequence Free text Gene Ontology (GO) enrichment Plus 12 more...	Fungi Oomycetes	EuPathDB	GFF3 SO FASTA Sequence Format GO	Elsevier - Current Opinion in Cell Biology - Guide for Authors Elsevier's Data Policy	None
FunTree: A Resource For Exploring The Functional Evolution Of Structurally Defined Enzyme Superfamilies	FunTree	Database	Biological evolution Enzyme Function analysis Life Science Phylogenetics Plus 1 more...	All	CATH domain	FASTA Sequence Format New Hampshire eXtended Format PDB	None	None
GABI-Kat SimpleSearch	GABI-Kat	Database	Classification Flanking Sequence Tags (FST) Flanking region Genome annotation Insertion Plus 5 more...	Arabidopsis thaliana	None	FASTA Sequence Format TAIR annotation data Format	None	None
Expression Atlas	Expression Atlas	Database	Differential gene expression analysis Gene expression data Life Science Proteomics RNA sequencing (RNA-Seq)	All	ArrayExpress Open Targets OmicsDI	OmicsDI XML format EFO GO	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
GeneDB	GeneDB	Database	Genome Life Science Pathogen Sequence	Bacteria Helmintha Protozoa Viruses	None	FASTA Sequence Format GO	None	None
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures	GeneSigDB: a manually curated database and resource for analysis of gene expression signatures	Database	Bibliography Cancer Curated information Gene Gene expression data Plus 1 more...	All Homo sapiens Mus musculus Rattus norvegicus	None	GenePattern GeneSet Table Format	None	None
HaploReg	HaploReg	Database	Allele frequency Annotation Biological regulation Chromatin immunoprecipitation - DNA sequencing (ChIP-seq) Chromatin structure variation Plus 4 more...	Homo sapiens	None	BED	None	None
Human Gene and Protein Database	HGPD	Database	DNA sequence Gene Gene Ontology (GO) enrichment Gene model annotation Image Plus 4 more...	Homo sapiens	None	FASTA Sequence Format	None	None
Human Histone Database	HIstome	Database	Citation Cross linking Enzyme Epigenetics Free text Plus 6 more...	Homo sapiens	None	FASTA Sequence Format	None	None
Human Mitochondrial Database	HmtDB	Database	Biomedical Science Mitochondrial genome	Homo sapiens	None	None	None	None
HotRegion	HotRegion	Database	Hot region Hot spot Life Science Protein interactions	All	None	PDB	None	None
Integrative and Conjugative Elements in Bacteria	ICEberg	Database	Conjugative transposon Genomic island Life Science Mobile genetic element	Bacteria	None	GenBank Sequence Format FASTA Sequence Format	None	None

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