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Showing records 1 - 50 of 53.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Animals in Research: Reporting In Vivo Experiments	ARRIVE	Standard	Life Sciences	Animal research In vivo design	Animalia Metazoa	None	None	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Cell Press - Cell Metabolism - Information for Authors Plus 12 more...	None
ArrayExpress	ArrayExpress	Database	Life Sciences	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas SMD DGVA FlyMine Plus 4 more...	EFO MAGE-TAB MIAME/Env MINSEQE OmicsDI XML format Plus 2 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR node contributed resources
BioSamples at the European Bioinformatics Institute	BioSD	Database	Life Sciences	Biological sample annotation	All	ArrayExpress ENA PRIDE	FAANG metadata sample specification standard FAANG metadata experiment specification standard EFO Bioschemas BioProject XML Schema Plus 1 more...	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
Case Reports	CARE	Standard	Biomedical Science	Patient care	Homo sapiens	None	CONSORT - OE	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 4 more...	None
ChEMBL	ChEMBL	Database	None	None	None	CP TargetMine	None	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 3 more...	Data Citation Implementation ELIXIR node contributed resources
Coherent X-ray Imaging Data Bank	CXIDB	Database	Life Sciences	Molecular structure X-ray diffraction Imaging	All	None	CXI EDMI-Functional	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 13 more...	Data Citation Implementation
CONSOlidated standards of Reporting Trials	CONSORT	Standard	Biomedical Science Preclinical and Clinical Studies	Data acquisition	Homo sapiens	None	COREQ CONSORT - OE CONSORT - UE TIDieR SPIRIT	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Springer Nature - Nature Medicine - Availability of Data and materials Plus 28 more...	BMJ - British Medical Journal
Crystallography Open Database	COD	Database	None	None	None	None	None	Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 HRB Open Research Plus 12 more...	Data Citation Implementation Chemistry
Database of Genomic Variants Archive	DGVA	Database	Genomics Life Sciences	Genetic polymorphism Curated information Structure	All	ArrayExpress ENA EGA Ensembl dbVar Plus 1 more...	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research Plus 24 more...	Data Citation Implementation
DataCite Metadata Schema	DataCite Metadata Schema	Standard	Life Sciences	Annotation Data retrieval Resource metadata Centrally registered identifier	All	Movebank Data Repository FAIRDOMHub ORCID candat Zenodo Plus 8 more...	Common Metadata Elements for Cataloging Biomedical Datasets OpenAIRE Guidelines for Data Archives DCTERMS	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 2 more...	bioCADDIE
Ensembl	Ensembl	Database	Biomedical Science Life Sciences	Gene prediction Genome alignment Genome annotation Genomic assembly Genome visualization Plus 2 more...	Caenorhabditis elegans Chordata Drosophila melanogaster Saccharomyces cerevisiae	MitoMiner NONCODE Gene3D neXtProt WikiPathways Plus 49 more...	BAM GTF FASTA GFF3 VCF Plus 5 more...	Gates Open Research Data Guidelines American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines Plus 3 more...	ELIXIR node contributed resources
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Sciences Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE EMBL sequence format FASTA Plus 4 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation ELIXIR node contributed resources
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics Life Sciences	DNA structural variation Genetic polymorphism Genotype Sequencing	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Plus 25 more...	Data Citation Implementation
Expression Atlas	Expression Atlas	Database	Life Sciences Proteomics	Differential gene expression analysis Gene expression data RNA sequencing	All	ArrayExpress Open Targets OmicsDI CP SAGD	GO OmicsDI XML format EFO	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Sciences Environmental Sciences Humanities Plus 2 more...	None	All	None	Schema.org Bioschemas SRAO DRAO FAIR Plus 1 more...	EMBO Recommended Databases and Data Standards GigaScience - Minimum Standards of Reporting Checklist F1000Research Data Policy Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist Plus 10 more...	None
figshare	figshare	Database	Data visualization	Image	All	OSF	Schema.org	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Materials - Availability of Data and materials Plus 26 more...	Data Citation Implementation
FORCE11 Data Citation Principles	FORCE11 DC	Standard	Life Sciences	Citation	All	Zenodo Ag Data Commons Imperial College Research Data Repository	Compact Identifier Format Reporting guidelines for research resources	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 6 more...	None
GenBank	GenBank	Database	Life Sciences	DNA sequence data Nucleic acid sequence Gene Genome	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 3 more...	SRA-XML NCBITAXON ABCDDNA FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Gene Expression Omnibus	GEO	Database	Life Sciences	DNA microarray Gene expression data Genome	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 5 more...	MIAME/Env SOFT MIAME MINiML	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
Gene Ontology Annotation	GOA	Database	Life Sciences	Gene Ontology enrichment Gene Protein	All	neXtProt PomBase APID Interactomes MoonProt HWG Plus 5 more...	ECO	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
Homologene	Homologene	Database	Life Sciences	Annotation Genome annotation Gene Genome	All	CCGD FlyMine MouseMine YeastMine BovineMine	None	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
HUGO Gene Nomenclature Committee	HGNC	Database	Life Sciences Ontology and Terminology	Gene name Gene	Homo sapiens	HPRD MGDD CRC Atlas The Chemical Probes Portal LNCipedia Plus 3 more...	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy HRB Open Research Plus 4 more...	Data Citation Implementation
Integrated relational Enzyme database	IntEnz	Database	Life Sciences	Classification Enzyme Commission number Enzyme Enzymatic reaction	All	BRENDA ExplorEnz CP	CHEBI	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
MEROPS	MEROPS	Database	Biomedical Science Life Sciences	DNA sequence data Enzyme Nucleic acid sequence Protein domain Amino acid sequence Plus 5 more...	All	None	FASTA	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
MetaboLights	MTBLS	Database	Life Sciences Metabolomics	Mass spectrometry spectra Lipid Metabolite Nuclear Magnetic Resonance (NMR) spectroscopy Publication	All	Rhea WikiPathways BRENDA OmicsDI	CHEBI BTO PSI-MS CV nmrCV ISA-Tab Plus 3 more...	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR node contributed resources
MGnify	MGnify	Database	Biomedical Science Environmental Sciences Life Sciences	Annotation DNA sequence data Gene prediction Metagenome Sequence annotation Plus 4 more...	All Anopheles gambiae Arabidopsis thaliana Bos indicus Bos taurus Plus 6 more...	ENA	GO MIxS - MIGS/MIMS MIxS FASTQ Sequence and Sequence Quality Format FASTA	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 13 more...	Data Citation Implementation ELIXIR node contributed resources
National Addiction & HIV Data Archive Program (NAHDAP)	NAHDAP	Database	Biomedical Science	addiction Disease Drug	Homo sapiens Human immunodeficiency virus	None	None	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 4 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
NCBI BioProject	BioProject	Database	Life Sciences	Annotation Sequencing	All	None	BioProject XML Schema	Gates Open Research Data Guidelines F1000Research Data Policy AAS Policy HRB Open Research Wellcome Open Research Data Guidelines Plus 2 more...	None
NCBI BioSample	BioSample	Database	Life Sciences	DNA structural variation Gene expression data Sequence Assay Cell line Plus 2 more...	All	GenBank GEO SRA dbGaP ENCODE Plus 1 more...	BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Photonics - Availability of Data and materials F1000Research Data Policy Plus 12 more...	Data Citation Implementation
NCBI Gene	Gene	Database	Life Sciences	Deoxyribonucleic acid Gene Genome	All	WikiPathways ImmPort Wikidata	GO FASTA	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
NCBI Probe Database	ProbeDB	Database	Life Sciences	Gene expression data Genetic polymorphism Oligonucleotide probe annotation Polymerase chain reaction primers Nucleotide	All	None	None	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
NCBI Trace Archives	NCBI Trace Archives	Database	Life Sciences	Multiple sequence alignment Sequence	All	None	None	Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials F1000Research Data Policy Plus 33 more...	Data Citation Implementation
NCBI Viral genomes	NCBI Viral genomes	Database	Life Sciences	Deoxyribonucleic acid Genome Ribonucleic acid Viral genome	Viruses	VirHostNet	FASTA	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
NeuroVault	NeuroVault	Database	Biomedical Science Life Sciences Neurobiology	Functional magnetic resonance imaging Neuroimaging	Homo sapiens	None	NIDM	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy AAS Policy Plus 15 more...	Data Citation Implementation
Online Mendelian Inheritance in Animals	OMIA	Database	Life Sciences	Classification Gene Phenotype	Metazoa	None	None	Gates Open Research Data Guidelines F1000Research Data Policy Elsevier - Lancet Infectious Diseases - Information for Authors HRB Open Research Wellcome Open Research Data Guidelines Plus 3 more...	None
OpenNeuro	OpenNeuro	Database	Biomedical Science Life Sciences Neurobiology	Cognition Imaging Magnetic resonance imaging	Homo sapiens	None	BIDS	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 24 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Open Science Framework	OSF	Database	Life Sciences Psychology	Cancer Data storage Study design	All	figshare Mendeley Data DataverseNL	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines F1000Research Data Policy BioMed Central - Minimum Standards of Reporting Checklist AAS Policy Plus 8 more...	Data Citation Implementation Open Science Prize
Pangaea - Data Publisher for Earth and Environmental Science	PANGAEA	Database	Agriculture Atmospheric Science Biology Chemistry Earth Sciences Plus 8 more...	Marine environment	All	BacDive	M2B3 Schema.org	GigaScience - Minimum Standards of Reporting Checklist Elsevier - Lancet Neurology - Information for Authors Elsevier - The Lancet - Information for Authors Gates Open Research Data Guidelines AGU Policy Plus 13 more...	Data Citation Implementation
Pfam	Pfam	Database	Life Sciences	Biological evolution Function analysis Computational predictions Protein domain Amino acid sequence Plus 2 more...	All	IDEAL PINA ProtoNet SMART SNPeffect Plus 19 more...	GO Stockholm Multiple Alignment Format FASTA HMMER Profile File Format NCBITAXON	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
Preferred Reporting Items for Systematic reviews and Meta-Analyses	PRISMA	Standard	Biomedical Science Preclinical and Clinical Studies	Data transformation Systematic review	Homo sapiens	None	None	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 10 more...	BMJ - British Medical Journal
PRINTS	PRINTS	Database	Life Sciences	Binding motif Protein domain Protein	All	ProtoNet PlantTFDB UniProtKB SPRINT Genome Properties	None	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	None
PROSITE	PROSITE	Database	Life Sciences	Protein domain Protein identification functional domain Protein Structure	All	ProtoNet PlantTFDB HAMAP Genome Properties	FASTA	Gates Open Research Data Guidelines F1000Research Data Policy HRB Open Research Wellcome Open Research Data Guidelines UCL Child Open Health Research Plus 2 more...	ELIXIR node contributed resources
Protein Data Bank in Europe	PDBe	Database	Bioinformatics Life Sciences	Drug structure Protein structure X-ray diffraction Deoxyribonucleic acid Electron density map Plus 5 more...	All	2P2Idb SNAPPI-DB CCD Europe PMC PDBePISA Plus 13 more...	CHEBI PDB Bioschemas GO PDBx/mmCIF	AAAS Science Policy Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Gates Open Research Data Guidelines F1000Research Data Policy Elsevier Data Policy Plus 16 more...	ELIXIR node contributed resources
PRoteomics IDEntifications database	PRIDE	Database	Life Sciences Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Ensembl ProteomeXchange jPOSTrepo OmicsDI Plus 2 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research Plus 29 more...	Data Citation Implementation ELIXIR node contributed resources
RCSB Protein Data Bank	RCSB PDB	Database	Biomedical Science Life Sciences	Deoxyribonucleic acid Protein Ribonucleic acid Structure	All	MINAS 2P2Idb MODOMICS IRD PDBe Plus 14 more...	PDB PDBx/mmCIF	Gates Open Research Data Guidelines Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission F1000Research Data Policy Elsevier Data Policy HRB Open Research Plus 7 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Reactome - a curated knowledgebase of biological pathways	Reactome	Database	Life Sciences	Reaction data Curated information pathway	All	IntAct Rhea WikiPathways APID Interactomes Ensembl Plus 15 more...	CHEBI BioPAX GO MITAB SBGN Plus 3 more...	Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Gates Open Research Data Guidelines Cold Spring Harbor Lab Press - Genome Research F1000Research Data Policy HRB Open Research Plus 4 more...	ELIXIR node contributed resources
Sequence Read Archive	SRA	Database	Life Sciences	DNA sequence data Sequence Sequence alignment Nucleic acid sequence alignment Allele Plus 2 more...	All	ImmPort BioSample HWG IPA BIP Plus 5 more...	SRA-XML MIxS - MIMARKS MINSEQE	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Materials - Availability of Data and materials Plus 40 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories Wheat Data Interoperability Guidelines
The Cancer Imaging Archive	TCIA	Database	Biomedical Science Oncology Radiology	Image Cancer Imaging	Homo sapiens	TCGA	DICOM	Gates Open Research Data Guidelines F1000Research Data Policy Elsevier Data Policy HRB Open Research Wellcome Open Research Data Guidelines Plus 6 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
The European Genome-phenome Archive	EGA	Database	Biomedical Science Life Sciences	DNA sequence data Genetic polymorphism Genome Genotype Phenotype	Homo sapiens	ENA EVA DGVA OmicsDI	MIxS BAM Schema.org OmicsDI XML format Bioschemas Plus 1 more...	National Child Development Study Policy for use and oversight of samples and data arising from the Biomedical Resource of the 1958 Birth Cohort Springer Nature - Nature Biotechnology - Availability of Data and materials Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Genetics - Availability of Data and materials EMBO Recommended Databases and Data Standards Plus 26 more...	Data Citation Implementation National Child Development Study (UK) ELIXIR node contributed resources
The Knowledge Network for Biocomplexity	KNB	Database	Earth Sciences Ecology Environmental Sciences	None	All	None	EML OBOE	Gates Open Research Data Guidelines AGU Policy F1000Research Data Policy AAS Policy HRB Open Research Plus 4 more...	None

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