Recommendation

GigaScience

This recommendation houses all the databases and standards mentioned in the submission checklist for the OUP journal GigaScience. The checklist itself is listed as a policy document in this recommendation.

This record is maintained by: GigaScience

This recommendation is taken from the following policy:

GigaScience - Minimum Standards of Reporting Checklist.

Record added: Dec. 16, 2016, 1:23 p.m..
Record updated: Nov. 28, 2017, 10:40 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000036' by 'The FAIRsharing Team' at 17:43, 19 Dec 2016 (approved):

	'in_curation' has been modified:
		Before: True
		After: on Collected databases have changed:  Previous values: GenBank The DNA Data Bank of Japan IntAct molecular interaction database Addgene The Cambridge Structural Database figshare ArrayExpress European Nucleotide Archive PRoteomics IDEntifications database HUGO Gene Nomenclature Committee  NeuroMorpho.Org caNanoLab Database of Single Nucleotide Polymorphism Gene Expression Omnibus Sequence Read Archive PubChem Database of Genotypes and Phenotypes Database of genomic structural VARiation Dryad Nucleic Acids Database TreeBase UniProt Knowledgebase miRBase Sequence Database Giga Science Database Electron Microscopy Data Bank ProteomeXchange EBI Metagenomics OpenfMRI NeuroVault Coherent X-ray Imaging Data Bank International Neuroimaging Data-Sharing Initiative European Variation Archive Database of Genomic Variants Archive Experimental data repository for KInetic MOdels of biological SYStems Pangaea - Data Publisher for Earth and Environmental Science Global Biodiversity Information Facility Open Science Framework Worldwide Protein Data Bank BioSample at the NCBI PlasmID New values:  GenBank The DNA Data Bank of Japan IntAct molecular interaction database Addgene The Cambridge Structural Database figshare ArrayExpress European Nucleotide Archive PRoteomics IDEntifications database HUGO Gene Nomenclature Committee  NeuroMorpho.Org caNanoLab Database of Single Nucleotide Polymorphism Gene Expression Omnibus Sequence Read Archive PubChem Database of Genotypes and Phenotypes Database of genomic structural VARiation Dryad Nucleic Acids Database TreeBase UniProt Knowledgebase miRBase Sequence Database Giga Science Database Electron Microscopy Data Bank ProteomeXchange EBI Metagenomics OpenfMRI NeuroVault Coherent X-ray Imaging Data Bank International Neuroimaging Data-Sharing Initiative European Variation Archive Database of Genomic Variants Archive Experimental data repository for KInetic MOdels of biological SYStems Pangaea - Data Publisher for Earth and Environmental Science Global Biodiversity Information Facility Open Science Framework Worldwide Protein Data Bank BioSample at the NCBI PlasmID MetaboLights

Showing records 1 - 50 of 57.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Addgene	Addgene	Database	Life Sciences	Bibliography Deoxyribonucleic acid Plasmid	All	None	GenBank Sequence Format RRID FASTA	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials BioMed Central - Minimum Standards of Reporting Checklist Springer Nature - Nature Chemical Biology - Availability of Data and materials Plus 9 more...	Data Citation Implementation eTRIKS Standards Starter Pack
Animals in Research: Reporting In Vivo Experiments	ARRIVE	Standard	Life Sciences	Animal research In vivo design	Animalia Metazoa	None	None	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Cell Press - Neuron - Information for Authors Plus 12 more...	None
ArrayExpress	ArrayExpress	Database	Life Sciences	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas SMD DGVA FlyMine Plus 5 more...	EFO MAGE-TAB MIAME/Env MINSEQE OmicsDI XML format Plus 2 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data and Data Deposition Resources
caNanoLab	caNanoLab	Database	Biomedical Science	Nanotechnology Bioactivity Nanoparticle Structure	Homo sapiens Mus musculus	None	NPO	GigaScience - Minimum Standards of Reporting Checklist Elsevier - Lancet Neurology - Information for Authors Elsevier - The Lancet - Information for Authors BioMed Central - Minimum Standards of Reporting Checklist Elsevier - Lancet Infectious Diseases - Information for Authors Plus 9 more...	Data Citation Implementation
Case Reports	CARE	Standard	Biomedical Science	Patient care	Homo sapiens	None	CONSORT - OE	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 4 more...	None
Coherent X-ray Imaging Data Bank	CXIDB	Database	Life Sciences	Molecular structure X-ray diffraction Imaging	All	None	CXI EDMI-Functional	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 13 more...	Data Citation Implementation
Consolidated criteria for reporting qualitative research	COREQ	Standard	Biomedical Science Health Sciences Preclinical and Clinical Studies	Study design	Homo sapiens	None	CONSORT	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	None
Consolidated Health Economic Evaluation Reporting Standards	CHEERS	Standard	Biomedical Science Health Sciences Medicine	None	Homo sapiens	None	None	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
CONSOlidated standards of Reporting Trials	CONSORT	Standard	Biomedical Science Preclinical and Clinical Studies	Data acquisition	Homo sapiens	None	COREQ CONSORT - OE CONSORT - UE TIDieR SPIRIT	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Springer Nature - Nature Photonics - Availability of Data and materials Plus 28 more...	BMJ - British Medical Journal
CONSOlidated Standards of Reporting Trials - Official Extensions	CONSORT - OE	Standard	Life Sciences Preclinical and Clinical Studies	Data acquisition	Homo sapiens	None	CARE CONSORT CONSORT - UE	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
CONsolidated Standards of Reporting Trials - Unofficial Extensions	CONSORT - UE	Standard	Life Sciences Preclinical and Clinical Studies	Data acquisition	Homo sapiens	None	CONSORT - OE CONSORT	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Life Sciences	Genetic polymorphism Genome	All	DGVA ClinVar DGV BovineMine	VarioML	GigaScience - Minimum Standards of Reporting Checklist Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Plus 34 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Genomic Variants Archive	DGVA	Database	Genomics Life Sciences	Genetic polymorphism Curated information Structure Sequence variant	All	ArrayExpress ENA EGA Ensembl dbVar Plus 1 more...	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research Plus 24 more...	Data Citation Implementation
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Life Sciences	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	ImmPort BioSample NSRR	VCF SRA-XML	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards IH Policy on sharing of model organisms for Biomedical Research Springer Nature - Nature Genetics - Availability of Data and materials Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 37 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Sciences	Genetic polymorphism Single nucleotide polymorphism Genome	Anas platyrhynchos Gallus gallus Glycine max Homo sapiens Oreochromis niloticus Plus 2 more...	PolymiRTS T1DBase EVA ClinVar mirDNMR Plus 3 more...	FASTA	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Biotechnology - Availability of Data and materials EMBO Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Materials - Availability of Data and materials Plus 35 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories National Child Development Study (UK)
DNA Data Bank of Japan	DDBJ	Database	Life Sciences	DNA sequence data Amino acid sequence Genome Nucleotide Sequencing	All	GenBank ENA NextDB JGA	NCBITAXON FASTA FASTQ Sequence and Sequence Quality Format GenBank Sequence Format INSDSeq Plus 1 more...	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 48 more...	Data Citation Implementation
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org	JDAP Data Archiving Policy GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Genetics - Availability of Data and materials Elsevier - The Lancet - Information for Authors Plus 27 more...	Data Citation Implementation BMJ - British Medical Journal
Electron Microscopy Data Bank	EMDB	Database	Life Sciences	X-ray diffraction Electron density map Microscopy Structure	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy EMBO Recommended Databases and Data Standards Springer Nature - Nature Genetics - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Plus 30 more...	Data Citation Implementation
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Sciences Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards Plus 53 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics Life Sciences	DNA structural variation Genetic polymorphism Genotype Sequencing	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Plus 25 more...	Data Citation Implementation
Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	Database	Life Sciences Metabolomics	Enzyme Reaction data Metabolite	All	None	SBML CellML	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist SciData Data Policy PLOS Recommended Repositories	Data Citation Implementation
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Sciences Environmental Sciences Humanities Plus 2 more...	None	All	None	Schema.org Bioschemas SRAO DRAO FAIR Plus 1 more...	EMBO Recommended Databases and Data Standards GigaScience - Minimum Standards of Reporting Checklist F1000Research Data Policy Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist Plus 10 more...	ELIXIR UK node resources
figshare	figshare	Database	Data visualization	Image	All	OSF	Schema.org	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Materials - Availability of Data and materials Plus 26 more...	Data Citation Implementation
FORCE11 Data Citation Principles	FORCE11 DC	Standard	Life Sciences	Citation	All	Zenodo Ag Data Commons Imperial College Research Data Repository	Compact Identifier Format Reporting guidelines for research resources	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 6 more...	None
GenBank	GenBank	Database	Life Sciences	DNA sequence data Nucleic acid sequence Gene Genome	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 3 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Gene Expression Omnibus	GEO	Database	Life Sciences	DNA microarray Gene expression data Genome	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 5 more...	MIAME/Env SOFT MIAME MINiML	GigaScience - Minimum Standards of Reporting Checklist AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
Giga Science Database	GigaDB	Database	Computational Biology Genetics Genomics Life Sciences Proteomics	Gene expression data Imaging Sequencing Software	All	None	ISA-Tab NCBITAXON Bioschemas	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist PLOS Recommended Repositories	Data Citation Implementation
Global Biodiversity Information Facility	GBIF	Database	Biodiversity Bioinformatics Life Sciences	Taxonomic classification	All	Scratchpads Brazilian Flora 2020 REFLORA Atlas of Living Australia IPT - GBIF Australia Repository GBIF Spain IPT - GBIF Spain Repository Plus 25 more...	TAPIR ABCD EML DwC	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council SciData Data Policy PLOS Recommended Repositories	Data Citation Implementation Global Biodiversity Information Facility (GBIF) international open data infrastructure
HUGO Gene Nomenclature Committee	HGNC	Database	Life Sciences Ontology and Terminology	Gene name Gene	Homo sapiens	STRING HPRD MGDD CRC Atlas The Chemical Probes Portal Plus 4 more...	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy HRB Open Research Plus 4 more...	Data Citation Implementation
IntAct molecular interaction database	IntAct	Database	Life Sciences Ontology and Terminology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 16 more...	CHEBI MIRO PSI-MI XML MITAB PSI-PAR XML Plus 5 more...	GigaScience - Minimum Standards of Reporting Checklist Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research Plus 10 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data and Data Deposition Resources
International Neuroimaging Data-Sharing Initiative	INDI	Database	Biomedical Science Life Sciences	Diffusion tensor imaging Functional magnetic resonance imaging Neuroimaging Phenotype	Homo sapiens	NITRC ABIDE	MIfMRI	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Springer Nature Research Data Policy Type 3 (for life sciences) Plus 6 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Investigation Study Assay Tabular	ISA-Tab	Standard	Functional Genomics Life Sciences	Biological sample DNA microarray Experiment metadata Gene expression data Report Plus 3 more...	All	SCDE MTBLS GMD GigaDB SCC Plus 6 more...	OBI CIMR MINSEQE MIAME MIAPE Plus 5 more...	EMBO Recommended Databases and Data Standards GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project bioCADDIE eTRIKS Standards Starter Pack FAIRDOM Community Standards Plus 2 more...
MetaboLights	MTBLS	Database	Life Sciences Metabolomics	Mass spectrometry spectra Lipid Metabolite Nuclear Magnetic Resonance (NMR) spectroscopy Publication	All	Rhea WikiPathways BRENDA OmicsDI	nmrCV CHEBI BTO ISA-Tab PSI-MS CV Plus 3 more...	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR Core Data and Data Deposition Resources
MGnify	MGnify	Database	Biomedical Science Environmental Sciences Life Sciences	Annotation DNA sequence data Gene prediction Metagenome Sequence annotation Plus 4 more...	All Anopheles gambiae Arabidopsis thaliana Bos indicus Bos taurus Plus 6 more...	ENA	GO MIxS - MIGS/MIMS FASTA FASTQ Sequence and Sequence Quality Format MIxS	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 13 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
MIAME Notation in Markup Language	MINiML	Standard	Functional Genomics Life Sciences	DNA microarray Gene expression data Report Assay	All	GEO SMIR	MIAME XML	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE
Minimum Information about any (x) Sequence	MIxS	Standard	None	DNA sequence data Metagenome Deoxyribonucleic acid Genetic marker Genome Plus 1 more...	Archaea Bacteria Eukaryota	GenBank DDBJ GOLD ENA EGA Plus 3 more...	ENVO Micro B3 GCDML MIxS - MIMARKS MIxS - MIGS/MIMS Plus 2 more...	SciData Data Policy GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Genomic Standards Consortium
miRBase Sequence Database	miRBase	Database	Life Sciences	Crowdsourcing RNA sequence Gene Micro RNA Ribonucleic acid	All	PolymiRTS miRNEST FlyMine GREENC MirGeneDB Plus 2 more...	EMBL sequence format FASTA	GigaScience - Minimum Standards of Reporting Checklist Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research The Plant Cell - Instructions for Authors Plus 1 more...	Data Citation Implementation Open Science Prize
NCBI BioSample	BioSample	Database	Life Sciences	DNA structural variation Gene expression data Sequence Assay Cell line Plus 2 more...	All	GenBank GEO SRA dbGaP ENCODE Plus 1 more...	BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard	GigaScience - Minimum Standards of Reporting Checklist Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Photonics - Availability of Data and materials F1000Research Data Policy Plus 12 more...	Data Citation Implementation
NeuroMorpho.Org	NeuroMorpho.Org	Database	Life Sciences	Cell morphology Neuron	Metazoa	None	None	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 4 Elsevier Data Policy Springer Nature Research Data Policy Type 3 Plus 8 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
NeuroVault	NeuroVault	Database	Biomedical Science Life Sciences Neurobiology	Functional magnetic resonance imaging Neuroimaging	Homo sapiens	None	NIDM	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy AAS Policy Plus 15 more...	Data Citation Implementation
Nucleic Acids Database	NDB	Database	Life Sciences	Nucleic acid sequence Deoxyribonucleic acid Ribonucleic acid	All	MINAS	PDB RNAO PDBx/mmCIF	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards BioMed Central - Minimum Standards of Reporting Checklist Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition Rockefeller University Press - Journal Of Cell Biology - Data Deposition	Data Citation Implementation
OpenNeuro	OpenNeuro	Database	Biomedical Science Life Sciences Neurobiology	Cognition Imaging Magnetic resonance imaging	Homo sapiens	None	BIDS	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist F1000Research Data Policy Springer Nature Research Data Policy Type 4 Plus 24 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Open Science Framework	OSF	Database	Life Sciences Psychology	Cancer Data storage Study design	All	figshare Mendeley Data DataverseNL	None	GigaScience - Minimum Standards of Reporting Checklist Gates Open Research Data Guidelines F1000Research Data Policy BioMed Central - Minimum Standards of Reporting Checklist AAS Policy Plus 8 more...	Data Citation Implementation Open Science Prize
Pangaea - Data Publisher for Earth and Environmental Science	PANGAEA	Database	Agriculture Atmospheric Science Biology Chemistry Earth Sciences Plus 8 more...	Marine environment	All	BacDive	Micro B3 Schema.org	GigaScience - Minimum Standards of Reporting Checklist Elsevier - Lancet Neurology - Information for Authors Elsevier - The Lancet - Information for Authors Gates Open Research Data Guidelines AGU Policy Plus 13 more...	Data Citation Implementation
PlasmID	PlasmID	Database	Biomedical Science Life Sciences	RNA interference Cloning plasmid Deoxyribonucleic acid Mutation analysis Plasmid	Homo sapiens Mus musculus	None	None	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
Preferred Reporting Items for Systematic reviews and Meta-Analyses	PRISMA	Standard	Biomedical Science Preclinical and Clinical Studies	Data transformation Systematic review	Homo sapiens	None	None	UCL Child Open Health Research HRB Open Research MNI Open Research AAS Policy Gates Open Research Data Guidelines Plus 10 more...	BMJ - British Medical Journal
ProteomeXchange	ProteomeXchange	Database	Life Sciences Proteomics	None	All	PRIDE PeptideAtlas jPOSTrepo MassIVE	MIAPE-MS PRIDE XML Format MIAPE MIAPE-MSI	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 4 Elsevier Data Policy Springer Nature Research Data Policy Type 3 Plus 10 more...	Data Citation Implementation
PRoteomics IDEntifications database	PRIDE	Database	Life Sciences Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Ensembl ProteomeXchange jPOSTrepo OmicsDI Plus 2 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	GigaScience - Minimum Standards of Reporting Checklist EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines BioMed Central - Minimum Standards of Reporting Checklist Cold Spring Harbor Lab Press - Genome Research Plus 29 more...	Data Citation Implementation ELIXIR Core Data and Data Deposition Resources
PubChem	PubChem	Database	Life Sciences	Assay Protein Small molecule Structure	All	WikiPathways CTD Guide to Pharmacology ChemIDplus ChemSpider Plus 5 more...	MIARE BAO HELM NDFRT GO	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Cell Press - Cell Host & Microbe - Information for Authors Plus 18 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Research Resource Identifiers	RRID	Standard	Biomedical Science Chemistry Life Sciences	None	All	FlyBase WormBase antibodyregistry.org Addgene RGD Plus 5 more...	Reporting guidelines for research resources	GigaScience - Minimum Standards of Reporting Checklist BioMed Central - Minimum Standards of Reporting Checklist	None

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