Recommendation

GigaScience

This recommendation houses all the databases and standards mentioned in the submission checklist for the OUP journal GigaScience. The checklist itself is listed as a policy document in this recommendation.

This record is maintained by: GigaScience

This recommendation is taken from the following policy:

Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist.

Record added: Dec. 16, 2016, 1:23 p.m..
Record updated: Nov. 28, 2017, 10:40 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/bsg-c000036' by 'The FAIRsharing Team' at 17:43, 19 Dec 2016 (approved):

	'in_curation' has been modified:
		Before: True
		After: on Collected databases have changed:  Previous values: GenBank The DNA Data Bank of Japan IntAct molecular interaction database Addgene The Cambridge Structural Database figshare ArrayExpress European Nucleotide Archive PRoteomics IDEntifications database HUGO Gene Nomenclature Committee  NeuroMorpho.Org caNanoLab Database of Single Nucleotide Polymorphism Gene Expression Omnibus Sequence Read Archive PubChem Database of Genotypes and Phenotypes Database of genomic structural VARiation Dryad Nucleic Acids Database TreeBase UniProt Knowledgebase miRBase Sequence Database Giga Science Database Electron Microscopy Data Bank ProteomeXchange EBI Metagenomics OpenfMRI NeuroVault Coherent X-ray Imaging Data Bank International Neuroimaging Data-Sharing Initiative European Variation Archive Database of Genomic Variants Archive Experimental data repository for KInetic MOdels of biological SYStems Pangaea - Data Publisher for Earth and Environmental Science Global Biodiversity Information Facility Open Science Framework Worldwide Protein Data Bank BioSample at the NCBI PlasmID New values:  GenBank The DNA Data Bank of Japan IntAct molecular interaction database Addgene The Cambridge Structural Database figshare ArrayExpress European Nucleotide Archive PRoteomics IDEntifications database HUGO Gene Nomenclature Committee  NeuroMorpho.Org caNanoLab Database of Single Nucleotide Polymorphism Gene Expression Omnibus Sequence Read Archive PubChem Database of Genotypes and Phenotypes Database of genomic structural VARiation Dryad Nucleic Acids Database TreeBase UniProt Knowledgebase miRBase Sequence Database Giga Science Database Electron Microscopy Data Bank ProteomeXchange EBI Metagenomics OpenfMRI NeuroVault Coherent X-ray Imaging Data Bank International Neuroimaging Data-Sharing Initiative European Variation Archive Database of Genomic Variants Archive Experimental data repository for KInetic MOdels of biological SYStems Pangaea - Data Publisher for Earth and Environmental Science Global Biodiversity Information Facility Open Science Framework Worldwide Protein Data Bank BioSample at the NCBI PlasmID MetaboLights

Showing records 1 - 50 of 57.

Name	Abbreviation	Type	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Addgene	Addgene	Database	Bibliography Deoxyribonucleic acid (DNA) Life Science Plasmid	All	None	FASTA GenBank Sequence Format	Springer Nature - Nature Genetics - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Springer Nature - Nature Chemical Biology - Availability of Data and materials National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies Springer Nature - Nature Medicine - Availability of Data and materials Plus 9 more...	Data Citation Implementation eTRIKS Standards Starter Pack
Animals in Research: Reporting In Vivo Experiments	ARRIVE	Standard	Animal research In vivo design Life Science	Animalia Metazoa	None	None	MNI Open Research HRB Open Research UCL Child Open Health Research AAS Policy Gates Open Research Data Guidelines Plus 12 more...	None
ArrayExpress	ArrayExpress	Database	Chromatin immunoprecipitation - DNA microarray (ChIP-chip) Chromatin immunoprecipitation - DNA sequencing (ChIP-seq) DNA microarray Gene expression data Genotyping Plus 4 more...	All	BioSD Expression Atlas SMD DGVA ClinVar Plus 3 more...	EFO MAGE-TAB MIAME/Env MINSEQE MIAME Plus 2 more...	AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards Plus 47 more...	Data Citation Implementation DNA Microarray ELIXIR node contributed resources
caNanoLab	caNanoLab	Database	Bioactivity Biomedical Science Nanoparticle Nanotechnology Structure	Homo sapiens Mus musculus	None	NPO	Elsevier - Lancet Neurology - Information for Authors Elsevier - The Lancet - Information for Authors Elsevier - Lancet Infectious Diseases - Information for Authors Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Elsevier Data Policy Plus 9 more...	Data Citation Implementation
Case Reports	CARE	Standard	Biomedical Science Patient care	Homo sapiens	None	CONSORT - OE	MNI Open Research HRB Open Research UCL Child Open Health Research AAS Policy Gates Open Research Data Guidelines Plus 4 more...	None
Coherent X-ray Imaging Data Bank	CXIDB	Database	Imaging Life Science Molecular structure X-ray diffraction	All	None	CXI	Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Plus 13 more...	Data Citation Implementation
Consolidated criteria for reporting qualitative research	COREQ	Standard	Biomedical Science Health sciences Preclinical and clinical studies Study design	Homo sapiens	None	CONSORT	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	None
Consolidated Health Economic Evaluation Reporting Standards	CHEERS	Standard	Biomedical Science Health sciences Medicine	Homo sapiens	None	None	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
CONSOlidated standards of Reporting Trials	CONSORT	Standard	Biomedical Science Data acquisition Preclinical and clinical studies	Homo sapiens	None	COREQ CONSORT - OE CONSORT - UE TIDieR SPIRIT	MNI Open Research HRB Open Research UCL Child Open Health Research AAS Policy Gates Open Research Data Guidelines Plus 28 more...	BMJ - British Medical Journal
CONSOlidated Standards of Reporting Trials - Official Extensions	CONSORT - OE	Standard	Data acquisition Life Science Preclinical and clinical studies	Homo sapiens	None	CARE CONSORT CONSORT - UE	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
CONsolidated Standards of Reporting Trials - Unofficial Extensions	CONSORT - UE	Standard	Data acquisition Life Science Preclinical and clinical studies	Homo sapiens	None	CONSORT - OE CONSORT	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	BMJ - British Medical Journal
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Genetic polymorphism Genome Life Science	All	DGVA ClinVar DGV	VarioML	Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Cold Spring Harbor Lab Press - Genome Research Plus 34 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Genomic Variants Archive	DGVA	Database	Curated information Genetic polymorphism Genomics Life Science Structure	All	ArrayExpress ENA EGA Ensembl dbVar Plus 1 more...	None	Gates Open Research Data Guidelines Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Cold Spring Harbor Lab Press - Genome Research F1000Research Data Policy Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Plus 24 more...	Data Citation Implementation
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Gene expression data Genetic polymorphism Genotype Plus 2 more...	Homo sapiens	ImmPort BioSample NSRR	SRA-XML VCF	EMBO Recommended Databases and Data Standards IH Policy on sharing of model organisms for Biomedical Research Springer Nature - Nature Genetics - Availability of Data and materials Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Biotechnology - Availability of Data and materials Plus 37 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Database of Single Nucleotide Polymorphism	dbSNP	Database	Genetic polymorphism Genome Life Science Single nucleotide polymorphism (SNP)	Anas platyrhynchos Gallus gallus Glycine max Homo sapiens Oreochromis niloticus Plus 2 more...	PolymiRTS T1DBase EVA ClinVar mirDNMR	FASTA	Springer Nature - Nature Biotechnology - Availability of Data and materials EMBO Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Materials - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Plus 35 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories National Child Development Study (UK)
DNA Data Bank of Japan	DDBJ	Database	Amino acid sequence DNA sequence data Genome Life Science Nucleotide Plus 1 more...	All	GenBank ENA NextDB JGA	MIxS FASTA GenBank Sequence Format NCBITAXON FASTQ Sequence and Sequence Quality Format Plus 1 more...	Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Springer Nature - Nature Genetics - Availability of Data and materials Plus 48 more...	Data Citation Implementation
Dryad	Dryad	Database	Curated information General purpose Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org	JDAP Data Archiving Policy AAAS Science Policy Springer Nature - Nature Genetics - Availability of Data and materials Elsevier - The Lancet - Information for Authors Springer Nature - Nature Biotechnology - Availability of Data and materials Plus 27 more...	Data Citation Implementation BMJ - British Medical Journal
Electron Microscopy Data Bank	EMDB	Database	Electron density map Life Science Microscopy Structure X-ray diffraction	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	AAAS Science Policy EMBO Recommended Databases and Data Standards Springer Nature - Nature Genetics - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Plus 30 more...	Data Citation Implementation
European Nucleotide Archive	ENA	Database	Amino acid sequence Annotation Bioinformatics tools and formats Data coordination Data management Plus 11 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 5 more...	SRA-XML NCBITAXON MIASPPE FASTA INSDSeq Plus 4 more...	AAAS Science Policy Elsevier - Lancet Neurology - Information for Authors Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines Plus 53 more...	Data Citation Implementation ELIXIR node contributed resources
European Variation Archive	EVA	Database	Biomedical Science DNA structural variation Genetic polymorphism Genetics Genomics Plus 3 more...	All	ENA EGA dbSNP UniProtKB ClinVar Plus 2 more...	HUGO SO	Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Materials - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Plus 25 more...	Data Citation Implementation
Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	Database	Enzyme Fluxomics Life Science Metabolite Metabolomics Plus 1 more...	All	None	SBML CellML	Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist SciData Data Policy PLOS Recommended Repositories	Data Citation Implementation
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Science Environmental Sciences Humanities Plus 2 more...	All	None	Schema.org Bioschemas SRAO DRAO FAIR Plus 1 more...	EMBO Recommended Databases and Data Standards F1000Research Data Policy Gates Open Research Data Guidelines Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Elsevier Data Policy Plus 10 more...	None
figshare	figshare	Database	Data sharing Data visualization General purpose Image	All	OSF	Schema.org	Springer Nature - Nature Biotechnology - Availability of Data and materials Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Materials - Availability of Data and materials F1000Research Data Policy Plus 26 more...	Data Citation Implementation
FORCE11 Data Citation Principles	FORCE11 DC	Standard	Citation Life Science	All	Zenodo Ag Data Commons	Compact Identifier Format Reporting guidelines for research resources	MNI Open Research HRB Open Research UCL Child Open Health Research AAS Policy Gates Open Research Data Guidelines Plus 6 more...	None
GenBank	GenBank	Database	DNA sequence data Gene Genome Life Science Nucleic acid sequence	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 3 more...	SRA-XML NCBITAXON FASTA GenBank Sequence Format INSDSeq Plus 3 more...	AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Plus 58 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Gene Expression Omnibus	GEO	Database	DNA microarray Gene expression data Genome Life Science	All	Nematode.net SMD ImmPort BioSample ENCODE Plus 4 more...	MIAME/Env SOFT MIAME MINiML	AAAS Science Policy Springer Nature - Nature Biotechnology - Availability of Data and materials Elsevier - Lancet Neurology - Information for Authors EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines Plus 56 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories DNA Microarray
Giga Science Database	GigaDB	Database	Computational biology Gene expression data Genetics Genomics Imaging Plus 4 more...	All	None	ISA-Tab NCBITAXON Bioschemas	Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist PLOS Recommended Repositories	Data Citation Implementation
Global Biodiversity Information Facility	GBIF	Database	Biodiversity Bioinformatics tools and formats Life Science Taxonomic classification	All	Scratchpads Brazilian Flora 2020 REFLORA Atlas of Living Australia IPT - GBIF Australia Repository GBIF Spain IPT - GBIF Spain Repository Plus 25 more...	TAPIR ABCD EML DwC	Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist SciData Data Policy PLOS Recommended Repositories	Data Citation Implementation Global Biodiversity Information Facility (GBIF) international open data infrastructure
HUGO Gene Nomenclature Committee	HGNC	Database	Gene Gene name Life Science Ontology and terminology	Homo sapiens	HPRD MGDD CRC Atlas The Chemical Probes Portal LNCipedia Plus 2 more...	None	Gates Open Research Data Guidelines F1000Research Data Policy Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist HRB Open Research Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Plus 4 more...	Data Citation Implementation
IntAct molecular interaction database	IntAct	Database	Binding Citation Experiment metadata Free text Gene Ontology (GO) enrichment Plus 7 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 8 more...	CHEBI MIRO PSI-MI XML PSI-PAR XML GO Plus 5 more...	Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission EMBO Recommended Databases and Data Standards Cold Spring Harbor Lab Press - Genome Research Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Plus 10 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR node contributed resources
International Neuroimaging Data-Sharing Initiative	INDI	Database	Biomedical Science Data sharing Diffusion tensor imaging Functional magnetic resonance imaging (fMRI) Life Science Plus 2 more...	Homo sapiens	NITRC ABIDE	MIfMRI	Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 3 (for life sciences) Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Plus 6 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Investigation Study Assay Tabular	ISA-Tab	Standard	Assay Biological sample DNA microarray Device Experiment metadata Plus 5 more...	All	SCDE MTBLS GMD GigaDB SCC Plus 7 more...	OBI CIMR MINSEQE MIQE MIAPE Plus 5 more...	EMBO Recommended Databases and Data Standards Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist	Metabolomics Standards and Databases H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project Wheat Data Interoperability Guidelines bioCADDIE eTRIKS Standards Starter Pack Plus 1 more...
MetaboLights	MTBLS	Database	Fluxomics Life Science Lipid Mass spectrometry spectra Metabolite Plus 3 more...	All	Rhea WikiPathways BRENDA OmicsDI	ISA-Tab CHEBI BTO PSI-MS CV nmrCV Plus 3 more...	EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Plus 16 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR node contributed resources
MGnify	MGnify	Database	16S ribosomal RNA (rRNA) Annotation Biomedical Science DNA sequence data Environmental Sciences Plus 8 more...	All Anopheles gambiae Arabidopsis thaliana Bos indicus Bos taurus Plus 6 more...	ENA	MIxS - MIGS/MIMS MIxS FASTQ Sequence and Sequence Quality Format FASTA GO	Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 3 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Plus 13 more...	Data Citation Implementation ELIXIR node contributed resources
MIAME Notation in Markup Language	MINiML	Standard	Assay DNA microarray Functional genomics Gene expression data Life Science Plus 1 more...	All	GEO SMIR	MIAME XML	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	DNA Microarray bioCADDIE
Minimum Information about any (x) Sequence	MIxS	Standard	DNA sequence data Deoxyribonucleic acid (DNA) Genetic marker Genome Metagenome Plus 1 more...	Archaea Bacteria Eukaryota	GenBank DDBJ GOLD ENA EGA Plus 2 more...	GCDML ENVO MIxS - MIMARKS MIxS - MIGS/MIMS MIxS CV Plus 2 more...	SciData Data Policy Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist	Genomic Standards Consortium
miRBase Sequence Database	miRBase	Database	Crowdsourcing Gene Life Science Micro RNA (miRNA) RNA sequence Plus 1 more...	All	PolymiRTS miRNEST GREENC MirGeneDB	EMBL sequence format FASTA	Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission Cold Spring Harbor Lab Press - Genome Research Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist The Plant Cell - Instructions for Authors Plus 1 more...	Data Citation Implementation Open Science Prize
NCBI BioSample	BioSample	Database	Assay Cell line DNA structural variation Gene expression data Genotype Plus 3 more...	All	GenBank GEO SRA dbGaP ENCODE Plus 1 more...	BioProject XML Schema FAANG metadata sample specification standard FAANG metadata experiment specification standard	Springer Nature - Nature Genetics - Availability of Data and materials Gates Open Research Data Guidelines Springer Nature - Nature Photonics - Availability of Data and materials F1000Research Data Policy Springer Nature - Nature Chemical Biology - Availability of Data and materials Plus 12 more...	Data Citation Implementation
NeuroMorpho.Org	NeuroMorpho.Org	Database	Cell morphology Data sharing Digital reconstruction Life Science Metadata standardization Plus 1 more...	Metazoa	None	None	Springer Nature Research Data Policy Type 4 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Elsevier Data Policy Springer Nature Research Data Policy Type 3 Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Plus 8 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
NeuroVault	NeuroVault	Database	Biomedical Science Brain imaging Functional magnetic resonance imaging (fMRI) Life Science Neurobiology Plus 1 more...	Homo sapiens	None	NIDM	Gates Open Research Data Guidelines F1000Research Data Policy Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist AAS Policy Cell Press - Cell Host & Microbe - Information for Authors Plus 15 more...	Data Citation Implementation
Nucleic Acids Database	NDB	Database	Deoxyribonucleic acid (DNA) Life Science Nucleic acid sequence Ribonucleic acid (RNA)	All	MINAS	PDB RNAO PDBx/mmCIF	EMBO Recommended Databases and Data Standards Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Rockefeller University Press - Journal Of Cell Biology - Data Deposition	Data Citation Implementation
OpenNeuro	OpenNeuro	Database	Biomedical Science Cognition Imaging Life Science Magnetic resonance imaging (MRI) Plus 1 more...	Homo sapiens	None	BIDS	Gates Open Research Data Guidelines F1000Research Data Policy Springer Nature Research Data Policy Type 4 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 3 Plus 24 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Open Science Framework	OSF	Database	Cancer Data storage General purpose Life Science Psychology Plus 1 more...	All	figshare Mendeley Data DataverseNL	None	Gates Open Research Data Guidelines F1000Research Data Policy Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist AAS Policy Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Plus 8 more...	Data Citation Implementation Open Science Prize
Pangaea - Data Publisher for Earth and Environmental Science	PANGAEA	Database	Agriculture Atmospheric Science Biology Chemistry Earth Science Plus 9 more...	All	BacDive	M2B3 Schema.org	Elsevier - Lancet Neurology - Information for Authors Elsevier - The Lancet - Information for Authors Gates Open Research Data Guidelines AGU Policy F1000Research Data Policy Plus 13 more...	Data Citation Implementation
PlasmID	PlasmID	Database	Biomedical Science Cloning plasmid Deoxyribonucleic acid (DNA) Expression plasmid Life Science Plus 3 more...	Homo sapiens Mus musculus	None	None	Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist	Data Citation Implementation
Preferred Reporting Items for Systematic reviews and Meta-Analyses	PRISMA	Standard	Biomedical Science Data transformation Preclinical and clinical studies Systematic review	Homo sapiens	None	None	MNI Open Research HRB Open Research UCL Child Open Health Research AAS Policy Gates Open Research Data Guidelines Plus 10 more...	BMJ - British Medical Journal
ProteomeXchange	ProteomeXchange	Database	Life Science Proteomics	All	PRIDE PeptideAtlas jPOSTrepo MassIVE	PRIDE XML Format MIAPE-MS MIAPE MIAPE-MSI	Springer Nature Research Data Policy Type 4 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Elsevier Data Policy Springer Nature Research Data Policy Type 3 Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Plus 10 more...	Data Citation Implementation
PRoteomics IDEntifications database	PRIDE	Database	Curated information Life Science Peptide Peptide identification Protein Plus 2 more...	All	BioSD Ensembl ProteomeXchange jPOSTrepo OmicsDI Plus 2 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	EMBO Recommended Databases and Data Standards Gates Open Research Data Guidelines Cold Spring Harbor Lab Press - Genome Research F1000Research Data Policy National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies Plus 29 more...	Data Citation Implementation ELIXIR node contributed resources
PubChem	PubChem	Database	Assay Life Science Protein Small molecule Structure	All	WikiPathways Guide to Pharmacology ChemIDplus ChemSpider BiGG Models Plus 3 more...	MIARE BAO HELM NDFRT GO	Springer Nature Research Data Policy Type 4 Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist Springer Nature Research Data Policy Type 3 Cell Press - Cell Host & Microbe - Information for Authors Cell Press - Developmental Cell - Information for Authors Plus 18 more...	Data Citation Implementation Open Science Prize NIH-supported data repositories
Recommended reporting guidelines for life science resources	Reporting guidelines for research resources	Standard	Biomedical Science Cell biology Developmental biology Immunology Life Science Plus 3 more...	All	None	FORCE11 DC	Springer Nature - BioMed Central - Minimum Standards of Reporting Checklist Oxford University Press - GigaScience - Minimum Standards of Reporting Checklist	None

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