Recommendation

The Royal Society - Data sharing and mining

This collection describes those recognised, publicly available repositories deemed appropriate for use by The Royal Society. Where no data-specific repository exists, authors should deposit their datasets in a general repository such as Dryad or Figshare. To allow others to verify and build on the work published in Royal Society journals, it is a condition of publication that authors make available the data, code and research materials supporting the results in the article.

This record is maintained by: Phil_Hurst ORCID

This recommendation is taken from the following policy:

The Royal Society - Data sharing and mining.

Record added: Oct. 7, 2019, 6:04 p.m..
Record updated: Oct. 7, 2019, 6:12 p.m. by The FAIRsharing Team.

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Open Access

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Edits to 'https://fairsharing.org/bsg-c000061' by 'The FAIRsharing Team' at 18:05, 07 Oct 2019 (not approved):

	'user_defined_tags' has been modified:
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			Open Access
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			Open Access
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Edits to 'https://fairsharing.org/bsg-c000061' by 'The FAIRsharing Team' at 18:12, 07 Oct 2019 (not approved):

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	'recommendation' has been modified:
		Before: False
		After: True

12 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Life Science	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Gene expression data Genotyping Plus 3 more...	All	BioSD Expression Atlas Bgee SMD DGVA Plus 8 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 2 more...	MNI Open Research Elsevier's Data Policy HRB Open Research UCL Child Open Health Research PLOS Recommended Repositories Plus 50 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
DNA Data Bank of Japan	DDBJ	Database	Data Submission, Annotation and Curation Life Science	Annotation DNA sequence data Amino acid sequence Genome Nucleotide Plus 1 more...	All	GenBank ENA NextDB JGA	NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format INSDSeq Plus 1 more...	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Plus 50 more...	Data Citation Implementation
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org DOI	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Plus 29 more...	Data Citation Implementation BMJ - British Medical Journal
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Functional Genomics Genomics Life Science Plus 2 more...	Annotation Amino acid sequence Deoxyribonucleic acid Histone Nucleotide Plus 2 more...	All	GenBank BioSD DDBJ Europe PMC EGA Plus 8 more...	SRA-XML NCBITAXON MIASPPE EMBL sequence format FASTA Plus 4 more...	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 HRB Open Research UCL Child Open Health Research Plus 58 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
figshare	figshare	Database	Data Visualization	Image	All	OSF	Schema.org DOI	MNI Open Research Springer Nature Research Data Policy Type 1 HRB Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Plus 28 more...	Data Citation Implementation
GenBank	GenBank	Database	Life Science	DNA sequence data Nucleic acid sequence Disease Gene Genome	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 4 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 HRB Open Research UCL Child Open Health Research Plus 62 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation Genetics & Genomics Next
Gene Expression Omnibus	GEO	Database	Life Science	DNA microarray Gene expression data Genome	All	Nematode.net Bgee SMD ImmPort BioSample Plus 13 more...	MIAME/Env SOFT MIAME MINiML	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 HRB Open Research UCL Child Open Health Research Plus 60 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation DNA Microarray Genetics & Genomics Next
Minimum Information About a Microarray Experiment	MIAME	Standard	Life Science Transcriptomics	DNA microarray Gene expression data Deoxyribonucleic acid Genome Nucleic acid hybridization Plus 1 more...	All	BuG@Sbase ArrayExpress GermOnline GEO CEBS Plus 6 more...	MAGE-TAB ISA-Tab SOFT MINiML MIAME/Env Plus 6 more...	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Plus 33 more...	National Child Development Study (UK) DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations
PRoteomics IDEntifications database	PRIDE	Database	Life Science Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Ensembl ProteomeXchange jPOSTrepo OmicsDI Plus 2 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	MNI Open Research Springer Nature Research Data Policy Type 1 HRB Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Plus 33 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
PubChem	PubChem	Database	Life Science	Assay Protein Small molecule Structure	All	ChEMBL WikiPathways CTD Guide to Pharmacology ChemIDplus Plus 9 more...	CHEMINF GO MIARE MESH NDFRT Plus 2 more...	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 22 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation Genetics & Genomics Next
TreeBase	TreeBase	Database	Life Science Phylogenetics Phylogenomics	Classification Taxonomic classification	All	None	MIAPA CDAO Newick tree Format NeXML	The Royal Society - Data sharing and mining BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Data Citation Implementation
Zenodo	Zenodo	Database	None	None	All	FAIRDOMHub	DataCite Metadata Schema FORCE11 DC Schema.org DC DOI Plus 1 more...	MNI Open Research HRB Open Research UCL Child Open Health Research PLOS Recommended Repositories AAS Policy Plus 13 more...	Genetics & Genomics Next

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