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Recommendation

The Royal Society - Data sharing and mining

This collection describes those recognised, publicly available repositories deemed appropriate for use by The Royal Society. Where no data-specific repository exists, authors should deposit their datasets in a general repository such as Dryad or Figshare. To allow others to verify and build on the work published in Royal Society journals, it is a condition of publication that authors make available the data, code and research materials supporting the results in the article.

This record is maintained by: Phil_Hurst ORCID

This recommendation is taken from the following policy:

The Royal Society - Data sharing and mining.

Record added: Oct. 7, 2019, 6:04 p.m..
Record updated: Oct. 7, 2019, 6:12 p.m. by The FAIRsharing Team.

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Open Access

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Edits to 'https://fairsharing.org/bsg-c000061' by 'The FAIRsharing Team' at 18:05, 07 Oct 2019 (not approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			Open Access
		Added:
			Open Access
		Removed:

Edits to 'https://fairsharing.org/bsg-c000061' by 'The FAIRsharing Team' at 18:12, 07 Oct 2019 (not approved):

	'recommendation' has been modified:
		Before: False
		After: True

12 records in view

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experiment metadata Gene expression data Plus 5 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 12 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 3 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 50 more...	RDA Covid-19 WG Resources Data Citation Implementation DNA Microarray ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
DNA Data Bank of Japan	DDBJ	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Amino acid sequence Sequence annotation Data storage Plus 4 more...	All	GenBank ENA NCBI Viral Genomes Resource NextDB JGA Plus 1 more...	NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format INSDSeq Plus 1 more...	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Plus 50 more...	RDA Covid-19 WG Resources Data Citation Implementation
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org DOI	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Plus 30 more...	NIH-supported data repositories Data Citation Implementation BMJ - British Medical Journal National Transportation Data Preservation Network (NTDPN)
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Amino acid sequence Sequence annotation Plus 6 more...	All	GenBank BioSD DDBJ ArrayExpress Europe PMC Plus 14 more...	SRA-XML NCBITAXON MIASPPE ENA Sequence Flat File Format FASTA Plus 5 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 58 more...	RDA Covid-19 WG Resources Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
figshare	figshare	Database	Data Visualization	Image	All	OSF	Schema.org DOI	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 29 more...	NIH-supported data repositories Data Citation Implementation
GenBank	GenBank	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Epidemiology Functional Genomics Plus 4 more...	Annotation DNA sequence data Genomic assembly Nucleic acid sequence Data storage Plus 9 more...	All	DDBJ NONCODE GENI-ACT IRD ENA Plus 6 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 62 more...	RDA Covid-19 WG Resources NIH-supported data repositories Data Citation Implementation Open Science Prize COVID-19 Resources Plus 1 more...
Gene Expression Omnibus	GEO	Database	Epidemiology Life Science Virology	DNA microarray Gene expression data Genome	All	NONCODE Nematode.net Bgee ArrayExpress SMD Plus 21 more...	MIAME/Env MIAME MINiML SOFT FAANG metadata experiment specification standard	MNI Open Research UCL Child Open Health Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Plus 60 more...	RDA Covid-19 WG Resources NIH-supported data repositories Data Citation Implementation DNA Microarray Open Science Prize Plus 3 more...
Minimum Information About a Microarray Experiment	MIAME	Standard	Life Science Transcriptomics	DNA microarray Experiment metadata Gene expression data Deoxyribonucleic acid Genome Plus 2 more...	All	BuG@Sbase ArrayExpress GermOnline GEO CEBS Plus 6 more...	MAGE-TAB ISA-Tab SOFT MINiML MIAME/Env Plus 9 more...	Springer Nature Research Data Policy Type 1 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 EMBO Recommended Databases and Data Standards American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors Plus 33 more...	RDA Covid-19 WG Resources National Child Development Study (UK) DNA Microarray FAIRDOM Community Standards Minimum Information for Biological and Biomedical Investigations
PRoteomics IDEntifications database	PRIDE	Database	Life Science Proteomics	Peptide identification Protein identification Curated information Peptide Protein	All	BioSD Expression Atlas Ensembl ProteomeXchange Cellosaurus Plus 6 more...	mzQuantML mzML HUPO-PSI TraML MIAPE OmicsDI XML format Plus 9 more...	MNI Open Research UCL Child Open Health Research Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Plus 33 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases Genetics & Genomics Next
PubChem	PubChem	Database	Epidemiology Life Science Virology	Assay Protein Small molecule Structure	All	ChEMBL WikiPathways CTD Guide to Pharmacology ChemIDplus Plus 10 more...	CHEMINF GO MIARE MESH NDFRT Plus 2 more...	Springer Nature Research Data Policy Type 1 PLOS Recommended Repositories Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 4 Springer Nature Research Data Policy Type 2 (for life sciences) Plus 22 more...	RDA Covid-19 WG Resources NIH-supported data repositories Data Citation Implementation Open Science Prize COVID-19 Resources Plus 1 more...
TreeBase	TreeBase	Database	Life Science Phylogenetics Phylogenomics	Classification Taxonomic classification	All	None	MIAPA Newick tree Format NeXML CDAO	The Royal Society - Data sharing and mining BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Data Citation Implementation
Zenodo	Zenodo	Database	None	None	All	FAIRDOMHub	DataCite Metadata Schema FORCE11 DC Schema.org DC DOI Plus 1 more...	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories EMBO Recommended Databases and Data Standards HRB Open Research Plus 14 more...	National Transportation Data Preservation Network (NTDPN) NIH-supported data repositories Genetics & Genomics Next

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