Recommendation

eLife Recommended Repositories and Standards

eLife has identified a set of trusted and established repositories for hosting data alongside eLife articles; this is a starting point rather than a non-exhaustive list of repositories we recommend and we do not mandate using only these.

This record is maintained by: wm.chan

This recommendation is taken from the following policy:

eLife Recommended Repositories and Standards.

Record added: June 6, 2019, 3:53 p.m..
Record updated: June 6, 2019, 3:54 p.m. by The FAIRsharing Team.

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Showing records 1 - 50 of 84.

Name	Abbreviation	Type	Subject	Domain	Taxonomy	Related Database	Related Standard	Related Policy	In Collection/Recommendation
Addgene	Addgene	Database	Life Science	Bibliography Deoxyribonucleic acid Plasmid	All	dkNET	GenBank Sequence Format RRID FASTA	Nature Publishing Group - Nature Genetics - Availability of Data and materials Springer Nature - Nature Medicine - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Nature Publishing Group - Nature Chemical Biology - Availability of Data and materials eLife Data Policy Plus 10 more...	Data Citation Implementation eTRIKS Standards Starter Pack
American Type Culture Collection database	ATCC	Database	Life Science	Cell Cell culture Cell line	All	None	None	Nature Publishing Group - Nature Genetics - Availability of Data and materials Nature Publishing Group - Nature Materials - Availability of Data and materials Springer Nature - Nature Medicine - Availability of Data and materials Springer Nature - Nature Photonics - Availability of Data and materials Nature Publishing Group - Nature Chemical Biology - Availability of Data and materials Plus 7 more...	None
ArrayExpress	ArrayExpress	Database	Functional Genomics	Chromatin immunoprecipitation - DNA microarray Chromatin immunoprecipitation - DNA sequencing DNA microarray Experiment metadata Gene expression data Plus 5 more...	All	BioSD Expression Atlas Bgee ENA GEO Plus 11 more...	MAGE-TAB EFO MIAME/Env MINSEQE MIAME Plus 3 more...	MNI Open Research Elsevier's Data Policy UCL Child Open Health Research PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 50 more...	Data Citation Implementation DNA Microarray ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources Genetics & Genomics Next
Australian Antarctic Data Centre	AADC	Database	Atmospheric Science Biology Earth Science Environmental Science Geology Plus 4 more...	None	All	GBIF	None	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	None
Biological General Repository for Interaction Datasets	BioGRID	Database	Biochemistry Bioinformatics Chemical Biology Cheminformatics Life Science Plus 2 more...	Biocuration Protein interaction High-throughput screening Gene Interactome Plus 5 more...	Arabidopsis thaliana Drosophila melanogaster Homo sapiens Saccharomyces cerevisiae Schizosaccharomyces pombe	AnimalTFDB FlyBase PhenoM SGD PomBase Plus 22 more...	MIRO BTO MITAB PSI-MI XML CLO Plus 1 more...	PLOS Recommended Repositories Cold Spring Harbor Lab Press - Genome Research SciData Data Policy eLife Data Policy Cell Press - Current Biology - Information for Authors	Open Science Prize NIH-supported data repositories Data Citation Implementation
Biological Magnetic Resonance Databank	BMRB	Database	Life Science	Molecular entity Nuclear Magnetic Resonance (NMR) spectroscopy Spectrum Structure	All	PDBe Protein Data Bank Japan RCSB PDB wwPDB	PDB NMR-STAR nmrCV CCPN data model NMR-ML	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 20 more...	Data Citation Implementation
ClinicalTrials.gov	ClinicalTrials.gov	Database	Biomedical Science Preclinical Studies	Disease Drug	Homo sapiens	dkNET PPMI EUCTR EudraCT	Protocol Registration Data Element Definitions CDISC CTR-XML	Elsevier's Data Policy AHRQ Policy Nature Publishing Group - Nature Genetics - Availability of Data and materials SciData Data Policy Nature Publishing Group - Nature Materials - Availability of Data and materials Plus 6 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation
Code Ocean	CO	Database	None	Software	Not applicable	None	None	MNI Open Research Gates Open Research Data Guidelines eLife Data Policy Taylor and Francis Data Policy Wellcome Open Research Data Guidelines	None
Coherent X-ray Imaging Data Bank	CXIDB	Database	Life Science	Molecular structure X-ray diffraction Imaging	All	None	CXI EDMI-Functional	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 14 more...	Data Citation Implementation
CONSOlidated standards of Reporting Trials	CONSORT	Standard	Biomedical Science Preclinical Studies	Data acquisition	Homo sapiens	None	COREQ CONSORT - OE CONSORT - UE TIDieR SPIRIT	MNI Open Research UCL Child Open Health Research HRB Open Research American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors AAS Policy Plus 31 more...	BMJ - British Medical Journal
Crystallography Open Database	COD	Database	Chemistry	Molecular structure X-ray crystallography assay X-ray diffraction	All	None	SMILES	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 13 more...	Data Citation Implementation Chemistry
Database of genomic structural VARiation	dbVar	Database	Biomedical Science Life Science	Genetic polymorphism Genome	All	DGVa ClinVar DGV BovineMine	VarioML	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Cold Spring Harbor Lab Press - Genome Research Plus 37 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation Genetics & Genomics Next
Database of Genotypes and Phenotypes	dbGaP	Database	Biomedical Science Epigenetics Life Science	Gene expression data Genetic polymorphism Genotype Phenotype	Homo sapiens	ImmPort BioSample NSRR exRNA Atlas	VCF SRA-XML DUO	IH Policy on sharing of model organisms for Biomedical Research NIH GWAS Sharing Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 39 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation Genetics & Genomics Next
Database of Interacting Proteins	DIP	Database	Biology Life Science	Protein interaction Protein	All	APID Interactomes STRING VirHostNet iRefWeb mentha Plus 2 more...	MITAB MIRO FASTA	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 10 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation International Molecular Exchange Consortium (IMEx)
Database of Single Nucleotide Polymorphism	dbSNP	Database	Life Science	Genetic polymorphism Single nucleotide polymorphism Genome	Homo sapiens	PolymiRTS T1DBase EVA ClinVar mirDNMR Plus 4 more...	XML JSON	NIH GWAS Sharing Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Plus 38 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation National Child Development Study (UK) Genetics & Genomics Next
DNA Data Bank of Japan	DDBJ	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Amino acid sequence Sequence annotation Data storage Plus 4 more...	All	GenBank ENA NextDB JGA	NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format INSDSeq Plus 1 more...	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Plus 50 more...	Data Citation Implementation
Dryad	Dryad	Database	None	Curated information Literature curation	All	None	Common Metadata Elements for Cataloging Biomedical Datasets Schema.org DOI	Elsevier's Data Policy Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Plus 29 more...	Data Citation Implementation BMJ - British Medical Journal
Electron Microscopy Data Bank	EMDB	Database	Biology	Biological imaging X-ray diffraction Electron density map Electron microscopy Microscopy Plus 1 more...	All	CCD PDBe RCSB PDB EMPIAR	PDB PDBx/mmCIF	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 32 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources
Environmental Data Initiative Data Repository	EDI	Database	Agriculture Atmospheric Science Biology Botany Earth Science Plus 6 more...	None	All	None	EML	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	None
Eukaryotic Pathogen Database Resources	EuPathDB	Database	Biomedical Science Life Science	Genome Orthologous Pathogen	Anncaliia Babesia Crithidia Cryptosporidium Edhazardia Plus 19 more...	FungiDB CryptoDB GiardiaDB MicrosporidiaDB PlasmoDB Plus 4 more...	OBI GFF3 FASTA	PLOS Recommended Repositories GGN SciData Data Policy eLife Data Policy	Open Science Prize NIH-supported data repositories Data Citation Implementation ELIXIR UK node resources Genetics & Genomics Next
European Mouse Mutant Archive	EMMA	Database	Computational Biology Genetics Life Science	Gene knockout Model organism Nucleic acid sequence Protein structure	Mus musculus	None	FASTA	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 2 (for life sciences) Springer Nature Research Data Policy Type 2 Plus 16 more...	None
European Nucleotide Archive	ENA	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Amino acid sequence Sequence annotation Plus 6 more...	All	GenBank BioSD DDBJ ArrayExpress Europe PMC Plus 11 more...	SRA-XML NCBITAXON MIASPPE FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Plus 58 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources Genetics & Genomics Next
European Variation Archive	EVA	Database	Biomedical Science Genetics Genomics	DNA structural variation Genetic polymorphism Genotype Sequencing Sequence variant	All	ENA EGA dbSNP UniProtKB DGVa Plus 4 more...	SO HUGO	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 26 more...	Data Citation Implementation ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources
Experimental data repository for KInetic MOdels of biological SYStems	KiMoSys	Database	Life Science Metabolomics	Reaction data Enzyme Metabolite	All	None	SBML CellML	PLOS Recommended Repositories SciData Data Policy eLife Data Policy BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Data Citation Implementation
FAIRsharing	FAIRsharing	Database	Agriculture Biomedical Science Earth Science Environmental Science Humanities Plus 2 more...	FAIR	All	None	Schema.org BioDBCore Bioschemas SRAO DRAO Plus 2 more...	MNI Open Research Elsevier's Data Policy UCL Child Open Health Research PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 12 more...	ELIXIR Recommended Interoperability Resources ELIXIR UK node resources Genetics & Genomics Next
figshare	figshare	Database	Data Visualization	Image	All	OSF	Schema.org DOI	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 28 more...	Data Citation Implementation
FlowRepository	FlowRepository	Database	Biology Cell Biology Life Science	Cell Cellular assay Flow cytometry assay	All	None	Gating-ML FuGEFlow MIFlowCyt FCS	PLOS Recommended Repositories Cell Press - Cell Host & Microbe - Information for Authors Cell Press - Cell Metabolism - Information for Authors Cell Press - Neuron - Information for Authors SciData Data Policy Plus 9 more...	Data Citation Implementation
FlyBase	FlyBase	Database	Anatomy Bioinformatics Comparative Genomics Data Submission, Annotation and Curation Functional Genomics Plus 5 more...	Bibliography Biocuration CRISPR Citation Clone library Plus 27 more...	Drosophila Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Plus 8 more...	DRSC-FGR SGD WormBase GenomeRNAi BDGP Plus 15 more...	FBbi FB-DV SO ECO FBsp Plus 12 more...	Elsevier's Data Policy PLOS Recommended Repositories Rockefeller University Press - Journal Of Cell Biology - Data Deposition Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council GGN Plus 4 more...	Open Science Prize NIH-supported data repositories Genetics & Genomics Next
GenBank	GenBank	Database	Bioinformatics Data Management Data Submission, Annotation and Curation Functional Genomics Genomics Plus 2 more...	Annotation DNA sequence data Genomic assembly Nucleic acid sequence Data storage Plus 9 more...	All	DDBJ GENI-ACT IRD ENA VirHostNet Plus 4 more...	SRA-XML NCBITAXON GenBank Sequence Format FASTA FASTQ Sequence and Sequence Quality Format Plus 4 more...	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Plus 62 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation Genetics & Genomics Next
Gene Expression Omnibus	GEO	Database	Life Science	DNA microarray Gene expression data Genome	All	Nematode.net Bgee ArrayExpress SMD ImmPort Plus 14 more...	MIAME/Env MIAME SOFT FAANG metadata experiment specification standard MINiML	MNI Open Research Elsevier's Data Policy Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Plus 60 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation DNA Microarray Genetics & Genomics Next
GenomeRNAi	GenomeRNAi	Database	Life Science	RNA interference	Drosophila melanogaster Homo sapiens	FlyBase FlyMine	None	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 5 more...	Data Citation Implementation
Giga Science Database	GigaDB	Database	Computational Biology Genetics Genomics Life Science Proteomics	Gene expression data Imaging Sequencing Software	All	None	ISA-Tab Bioschemas NCBITAXON	PLOS Recommended Repositories eLife Data Policy BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist	Data Citation Implementation
GitHub	GitHub	Database	Bioinformatics Knowledge and Information Systems	None	All	None	None	Nature Publishing Group - Nature Genetics - Availability of Data and materials Nature Publishing Group - Nature Materials - Availability of Data and materials eLife Data Policy Nature Publishing Group - Nature Biotechnology - Availability of Data and materials	None
Global Biodiversity Information Facility	GBIF	Database	Biodiversity Bioinformatics Life Science	Taxonomic classification	All	Scratchpads Brazilian Flora 2020 REFLORA ALA IPT - GBIF Australia Repository GBIF Spain IPT - GBIF Spain Repository Plus 28 more...	DwC TAPIR EML ABCD	PLOS Recommended Repositories Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council SciData Data Policy eLife Data Policy BioMed Central - Minimum Standards of Reporting Checklist Plus 1 more...	Data Citation Implementation Global Biodiversity Information Facility (GBIF) international open data infrastructure
G-Node Data Infrastructure Services	GIN	Database	Neurophysiology Neuroscience	None	All	None	odML	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	None
Harvard Dataverse	Harvard Dataverse	Database	Data Management	Experiment metadata	All	Scholars Portal Dataverse TDR DataverseNL e-cienciaDatos UNC Dataverse	Schema.org DOI	Elsevier's Data Policy PLOS Recommended Repositories Cell Press - Cell Metabolism - Information for Authors Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council Cell Press - Neuron - Information for Authors Plus 11 more...	None
High Energy Physics Data Repository	HEPData	Database	Chemistry Natural Science Physics	None	Not applicable	None	Schema.org	Elsevier's Data Policy PLOS Recommended Repositories Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council SciData Data Policy eLife Data Policy	Chemistry
HUGO Gene Nomenclature Committee	HGNC	Database	Life Science Ontology and Terminology	Gene name Gene	Homo sapiens	FlyBase STRING HPRD MGDD CRC Atlas Plus 8 more...	None	MNI Open Research UCL Child Open Health Research HRB Open Research AAS Policy GGN Plus 6 more...	Data Citation Implementation Genetics & Genomics Next
Image Data Resource	IDR	Database	Life Science	Biological imaging High-content screen Super-resolution microscopy	Arabidopsis thaliana Drosophila Homo sapiens Mus musculus Saccharomyces cerevisiae Plus 2 more...	Ensembl OMERO BioImage Archive	OME-TIFF EDMI-Functional OME-XML GO CMPO	Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council SciData Data Policy eLife Data Policy	EOSC-Life Resources Euro-BioImaging
Influenza Research Database	IRD	Database	Biomedical Science Genomics Proteomics	Gene expression data Sequence feature Structure	Influenza virus	GenBank CSA RefSeq BEI RCSB PDB Plus 1 more...	OBI OGMS IDO IAO CLUSTAL-W Alignment Format Plus 5 more...	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	Open Science Prize NIH-supported data repositories Data Citation Implementation
IntAct molecular interaction database	IntAct	Database	Biology	Citation Experiment metadata Gene Ontology enrichment Gene name Protein domain Plus 5 more...	All	MINT Gene3D neXtProt APID Interactomes Reactome Plus 17 more...	ChEBI MIRO PSI-PAR XML MITAB GO Plus 5 more...	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories EMBO Recommended Databases and Data Standards Plus 12 more...	Data Citation Implementation International Molecular Exchange Consortium (IMEx) ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources
Integrated Taxonomic Information System	ITIS	Database	Life Science	Taxonomic classification	All	Ag Data Commons	NIFSTD	PLOS Recommended Repositories SciData Data Policy eLife Data Policy	Data Citation Implementation
International Neuroimaging Data-Sharing Initiative	INDI	Database	Biomedical Science Life Science	Diffusion tensor imaging Functional magnetic resonance imaging Brain imaging Phenotype	Homo sapiens	NITRC ABIDE	MIfMRI	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies PLOS Recommended Repositories Springer Nature Research Data Policy Type 2 (for life sciences) Plus 7 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation
Knockout Mouse Project	KOMP	Database	Life Science	Gene knockout Gene Genetic strain	Mus musculus	None	GO	Springer Nature Research Data Policy Type 1 Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Springer Nature Research Data Policy Type 2 (for life sciences) Springer Nature Research Data Policy Type 2 Plus 16 more...	None
MetaboLights	MTBLS	Database	Data Submission, Annotation and Curation Metabolomics Structural Biology	Biocuration Biological sample Chemical formula Chemical structure Mass spectrometry spectra Plus 9 more...	All	Rhea WikiPathways BRENDA OmicsDI DES-TOMATO	nmrCV ChEBI ISA-Tab PSI-MS CV BTO Plus 3 more...	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 18 more...	Metabolomics Standards and Databases Data Citation Implementation H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project ELIXIR Core Data Resources and Deposition Databases EOSC-Life Resources Plus 1 more...
MGI Mouse Gene Expression Database	GXD	Database	Life Science	Gene expression data Genome	Mus musculus	MGI MouseMine	MA EMAP ATOL	PLOS Recommended Repositories GGN eLife Data Policy	Genetics & Genomics Next
MGnify	MGnify	Database	Biodiversity Biomedical Science Data Submission, Annotation and Curation Environmental Science Life Science Plus 3 more...	Annotation DNA sequence data Gene prediction Metagenome Sequence annotation Plus 5 more...	All Anopheles gambiae Arabidopsis thaliana Bos indicus Bos taurus Plus 6 more...	ENA	MIxS - MIGS/MIMS FASTA FASTQ Sequence and Sequence Quality Format MIxS GO	MNI Open Research Springer Nature Research Data Policy Type 1 UCL Child Open Health Research Springer Nature Research Data Policy Type 4 Springer Nature - Research Data Policies Plus 14 more...	Data Citation Implementation ELIXIR Non-CDR and Non-Deposition Database
miRBase Sequence Database	miRBase	Database	Life Science	Crowdsourcing RNA sequence Gene Micro RNA Ribonucleic acid	All	PolymiRTS miRNEST FlyMine GREENC MirGeneDB Plus 4 more...	EMBL sequence format FASTA	PLOS Recommended Repositories Cold Spring Harbor Lab Press - Genome Research eLife Data Policy BioMed Central - Minimum Standards of Reporting Checklist GigaScience - Minimum Standards of Reporting Checklist Plus 2 more...	Open Science Prize Data Citation Implementation
National Addiction & HIV Data Archive Program (NAHDAP)	NAHDAP	Database	Biomedical Science	Addiction Disease Drug	Homo sapiens Human immunodeficiency virus	None	None	MNI Open Research UCL Child Open Health Research PLOS Recommended Repositories HRB Open Research AAS Policy Plus 5 more...	Open Science Prize NIH-supported data repositories Data Citation Implementation
National Database for Autism Research (NDAR)	NDAR	Database	Biomedical Science	Autistic disorder Behavior Disease	Homo sapiens	RDoCdb NDCT	NIFTI DICOM	PLOS Recommended Repositories Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council SciData Data Policy eLife Data Policy	Open Science Prize NIH-supported data repositories Data Citation Implementation

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