The standards in FAIRsharing are manually curated from a variety of sources, including BioPortal, MIBBI and the Equator Network.


46 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

mz peptide and protein Identification Markup Language mzIdentML Standard None None ready

mz Quantitative Markup Language mzQuantML Standard None ready
HUPO PSI Mass Spectrometry Controlled Vocabulary PSI-MS CV Standard None ready
Sample processing and separations controlled vocabulary sepCV Standard None None ready

Gel electrophoresis Markup Language PSI GelML Standard None ready
Gene Ontology GO Standard ready

mz Markup Language mzML Standard ready

Molecular Interaction Tabular MITAB Standard None ready

Molecular Interaction eXtensible Markup Language PSI-MI XML Standard None ready
INOH Molecule Role IMR Standard None None None deprecated
PSI Molecular Interaction Controlled Vocabulary PSI-MI CV Standard None ready

Protein Affinity Reagent eXtensible Markup Language PSI-PAR XML Standard None None ready
Protein MODification PSI-MOD Standard None None ready
PRotein Ontology PRO Standard None ready

Separation Markup Language PSI SpML Standard None None ready
Protein Affinity Reagent Controlled Vocabulary PSI-PAR CV Standard None None uncertain

Minimal Information for Protein Functional Evaluation MIPFE Standard None None uncertain

Standards for Reporting Enzymology Data Guidelines STRENDA Standard ready

Minimal Information Required In the Annotation of Models MIRIAM Standard ready

Minimum Information about a Molecular Interaction Experiment MIMIx Standard ready

Minimum Information about a Protein Affinity Reagent MIAPAR Standard None None ready

Minimum Information About a Proteomics Experiment MIAPE Standard ready

Minimum Information About a Simulation Experiment MIASE Standard None ready

Axt Alignment Format Axt Alignment Format Standard None None None ready

FASTA Sequence Format FASTA Sequence Format Standard None ready

mini Protein Data Bank Format mini Protein Data Bank Format Standard None None None uncertain

Protein Data Bank Format PDB Standard None None ready

Protein InFormation Resource Format PIFRF Standard None None None ready

BLAST-like Alignment Tool Format BLAT Format Standard None None None ready

Stockholm Multiple Alignment Format Stockholm Multiple Alignment Format Standard None None None ready

UniProtKB XML Format UniProtKB XML Format Standard None None None ready

eXtensible Graph Markup and Modeling Language eXtensible Graph Markup and Modeling Language Standard None None None None ready
Proteomics Pipeline Infrastructure for CPTAC CPTAC Standard None None None None uncertain
Cell Line Ontology [by Mahadevan] MCCL Standard None None None None ready
Ontology for MicroRNA Target OMIT Standard None None None None ready
BioAssay Ontology BAO Standard ready
Clusters of Orthologous Groups (COG) Analysis Ontology CAO Standard None None None ready
Uniprot Core Ontology core Standard None None None ready

MIAPE: Mass Spectrometry Quantification MIAPE-Quant Standard None ready

Gene Product Annotation Data GPAD 1.1 Standard None None None ready

Gene Product Information Format GPI Standard None None None ready

MIAPE: Mass Spectrometry MIAPE-MS Standard ready

MIAPE: Mass Spectrometry Informatics MIAPE-MSI Standard ready

MIAPE: Gel Informatics MIAPE-GI Standard None ready

MIAPE: Column Chromatography MIAPE-CC Standard None ready

MIAPE: Capillary Electrophoresis MIAPE-CE Standard None ready